View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8847_low_1 (Length: 331)
Name: NF8847_low_1
Description: NF8847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8847_low_1 |
 | |
|
| [»] scaffold0510 (2 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0510 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 11995 - 11684
Alignment:
| Q |
8 |
atggacatcagtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaac |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11995 |
atggacaccagtgggtaggcgtatgccggtatctttgataagacccatgattaaacggggaaaagagagacgagcatctctttcacctcttccttgcaac |
11896 |
T |
|
| Q |
108 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11895 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttaatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
11796 |
T |
|
| Q |
208 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11795 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
11696 |
T |
|
| Q |
308 |
ctcactgatgtc |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11695 |
ctcactgatgtc |
11684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 5570 - 5272
Alignment:
| Q |
8 |
atggacatcagtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaac |
107 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| || ||| ||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
5570 |
atggacactagtgggtaggcgcatgccggtatctttaatgagacccaggattcaaccgggaaaagagagacgagcctctctttcagt------------- |
5484 |
T |
|
| Q |
108 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
207 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5483 |
gtgaccattcggaggtcccaagaaatggtacgggcaatatctaccttgatgcctttgaggatgtagtaaattaaagggcacacctcgacaacacagtcag |
5384 |
T |
|
| Q |
208 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||| |
|
|
| T |
5383 |
aaagatgactattgggcatgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactaggcccggtattctctcctggc |
5284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 41294625 - 41294936
Alignment:
| Q |
8 |
atggacatcagtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaac |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41294625 |
atggacaccagtgggtaggcgtatgccggtatctttgataagacccatgattaaacggggaaaagagagacgagcatctctttcacctcttccttgcaac |
41294724 |
T |
|
| Q |
108 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41294725 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttaatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
41294824 |
T |
|
| Q |
208 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41294825 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
41294924 |
T |
|
| Q |
308 |
ctcactgatgtc |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41294925 |
ctcactgatgtc |
41294936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 41302209 - 41301898
Alignment:
| Q |
8 |
atggacatcagtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaac |
107 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
41302209 |
atggacactagtgggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagg |
41302110 |
T |
|
| Q |
108 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41302109 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttgatgcctttgaggatgtagtaaattaaagggcacacctcgacaacacagtcag |
41302010 |
T |
|
| Q |
208 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||| |
|
|
| T |
41302009 |
aaagatgactattgggcatgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactaggcccggtattctctcctggc |
41301910 |
T |
|
| Q |
308 |
ctcactgatgtc |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41301909 |
ctcactgatgtc |
41301898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 39056374 - 39056076
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39056374 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
39056275 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39056274 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
39056175 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
39056174 |
gggcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
39056076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 53246 - 53548
Alignment:
| Q |
17 |
agtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccatt |
116 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
53246 |
agtgggtaggcgcatgccggcatccttgatgagacccatgattaaaccgggaaaagagagacgagcctctctttcacctcttccttgtagtgtgaccatt |
53345 |
T |
|
| Q |
117 |
cggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgac |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53346 |
cggagttcccaagcaatggtacgggcaatatctaccttgatgcctttgaggatgtagtaaattaaagggcacacctcgacaacacagtcagaaagatgac |
53445 |
T |
|
| Q |
217 |
tattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgat |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
53446 |
tattgggcatgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtattgggcccagtattctctcccggcctcactgat |
53545 |
T |
|
| Q |
317 |
gtc |
319 |
Q |
| |
|
||| |
|
|
| T |
53546 |
gtc |
53548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 22354382 - 22354684
Alignment:
| Q |
17 |
agtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccatt |
116 |
Q |
| |
|
||||||||| || ||||||||||| ||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||| |
|
|
| T |
22354382 |
agtgggtagtcgcatgccggtatccttgatgacacccatgattaaaccgggaaaagagagacgagcctctctttcacctcttccttgtagtgtgatcatt |
22354481 |
T |
|
| Q |
117 |
cggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgac |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22354482 |
cggagttcccatgcaatggtccgggcaatatctaccttgatgcctttgaggatgtagtaaattaaagggcacacctcgacaacacagtcagaaagatgac |
22354581 |
T |
|
| Q |
217 |
tattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgat |
316 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22354582 |
tattgggcacgacattatagagaattaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatattctctcccggcctcactgat |
22354681 |
T |
|
| Q |
317 |
gtc |
319 |
Q |
| |
|
||| |
|
|
| T |
22354682 |
gtc |
22354684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 2963471 - 2963769
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2963471 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
2963570 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
2963571 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
2963670 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
2963671 |
gggcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
2963769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 29977485 - 29977783
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29977485 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
29977584 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
29977585 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
29977684 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
29977685 |
gggcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
29977783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 30019157 - 30018859
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30019157 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
30019058 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
30019057 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
30018958 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
30018957 |
gggcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
30018859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 1944181 - 1944492
Alignment:
| Q |
8 |
atggacatcagtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaac |
107 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
1944181 |
atggacactagtgggtaggcgcatgccggtatctttgataagacccatgattaaaccaggaaaagagagacgggcctctctctcacctcttccttgcagt |
1944280 |
T |
|
| Q |
108 |
gtgaccattcggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1944281 |
gtgaccattcggagttcccaagcaatggtacgggcaatatctaccttgatgtctttgaggatgtagtaaattaaagggcacacctcgacaacacagtcag |
1944380 |
T |
|
| Q |
208 |
aaagatgactattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggc |
307 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||| |
|
|
| T |
1944381 |
aaagatgactattgggcatgacattgtaaagaataaatttttgtatgattttggcctcatttgtattgaatttgtattgggcccggtattctctcccggc |
1944480 |
T |
|
| Q |
308 |
ctcactgatgtc |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1944481 |
ctcactgatgtc |
1944492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 1945835 - 1945533
Alignment:
| Q |
17 |
agtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccatt |
116 |
Q |
| |
|
||||||||| || |||||||||| ||||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||| |
|
|
| T |
1945835 |
agtgggtagtcgcatgccggtatacttgatgagacctatgattaaaccgggaaaagagagacgagcctctctttcacctcttccttgtagtgtgatcatt |
1945736 |
T |
|
| Q |
117 |
cggagttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgac |
216 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1945735 |
ctgagttcccatgcaatggtccgggcaatatctagcttgatgcccttgaggatgtagtaaattaaagggcacacctcgacaacacagtcagaaagatgac |
1945636 |
T |
|
| Q |
217 |
tattgggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgat |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
1945635 |
tattgggcatgacattatagagaatgaatttttgtatgattttggtctcatttgtcatgattttgtactgggcccggtattctctcccggcctcgctgat |
1945536 |
T |
|
| Q |
317 |
gtc |
319 |
Q |
| |
|
||| |
|
|
| T |
1945535 |
gtc |
1945533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 48350179 - 48349881
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48350179 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
48350080 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
48350079 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
48349980 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
48349979 |
gggcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
48349881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 8010017 - 8009719
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8010017 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaatcgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
8009918 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8009917 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
8009818 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
8009817 |
gggcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
8009719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 34652374 - 34652672
Alignment:
| Q |
21 |
ggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttgcaacgtgaccattcgga |
120 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34652374 |
ggtaggcgcatgccggtatctttaatgagtcccatgattaaaccgggaaaaaagagacgagcttctctttcacctcttccttgcagggtgaccattcgga |
34652473 |
T |
|
| Q |
121 |
gttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggcacacctcgacaacacagtcagaaagatgactatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
34652474 |
gttcccaagcaatggtccgggcaatatctaccttgatccccttgaggatgtagtagattaaaggacacacctcgacaacacaatcagacagatgactatt |
34652573 |
T |
|
| Q |
221 |
gggcctgacattatagagaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcactgatgtc |
319 |
Q |
| |
|
| ||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
34652574 |
gagcctgacattataaagaatgaatttttggataattttggcctcattggtcatgaatttgtattgggcccgatactctctccctgcatcactgatgtc |
34652672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 7937 - 7861
Alignment:
| Q |
237 |
agaatgaatttttgtatgattttggcctcatttgtcatgaatttgtactgggcccgatactctctcccggcctcact |
313 |
Q |
| |
|
|||||||||||||| || | |||||||||||| |||||||| ||||| ||||| || ||||||| |||||||||||| |
|
|
| T |
7937 |
agaatgaatttttggataaatttggcctcattggtcatgaacttgtattgggctcggtactctcgcccggcctcact |
7861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 8050266 - 8050361
Alignment:
| Q |
8 |
atggacatcagtgggtaggcgtatgccggtatctttgataagaaccatgattaaacggggaaaagagagacgagcctctctttcacctcttccttg |
103 |
Q |
| |
|
||||||| ||||||| || | |||||||| || ||||| ||| ||||||| | || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
8050266 |
atggacaacagtggggagtctcatgccggtgtccttgatgagacccatgatgagaccagggaaagagaggcgagcctctctttcacctcttccttg |
8050361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 5695 - 5630
Alignment:
| Q |
122 |
ttcccaagcaatggtccgggcaatatctaccttgatgcccttgaggatgtagtagattaaagggca |
187 |
Q |
| |
|
|||||||||||| || |||| || || || |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5695 |
ttcccaagcaatagtgtgggctatgtcgactttgatgcccttgagaatgtagtagattaatgggca |
5630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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