View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8848_low_2 (Length: 430)
Name: NF8848_low_2
Description: NF8848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8848_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 7904861 - 7905272
Alignment:
| Q |
1 |
ctaaatgaaaaagtaactcatacacttcactttctatgctgagaatggtgcaaagatttttgtgaaccatgaaaaagatccaaaatataacattgtagat |
100 |
Q |
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| T |
7904861 |
ctaaatgagaaagtaactcatacacttcactttctatgctgagaatggtgcaaagatttttgtgaaccatgaaaaagatccaaaatataacattgtagat |
7904960 |
T |
|
| Q |
101 |
catcgaccgtatacttgatccacttctcatcaatgttagacgagtttctacctgtataacttcggtaagcaggaataactttctgagaaaccgatatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
7904961 |
catcgaccgtatacttgatccacttctcatcaatgttagacgagtttctacctgtataacttcggtaagcaggaatcaatttctgagaaaccgatatttg |
7905060 |
T |
|
| Q |
201 |
taggtcttcgcgaagttctttatcaggtacactccaccccgtctgtgttttgtatacttcaccaaaagcagtactaaaatctttgcattttttctttagt |
300 |
Q |
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| T |
7905061 |
taggtcttcgcgaagttctttatcaggtacactccaccccgtctgtgttttgtatacttcaccaaaagcagtactaaaatctttgcattttttctttagt |
7905160 |
T |
|
| Q |
301 |
tttctcttcactccgcaattcgataaactttcctcactgaacacagaaagtactgcactccaagtcaccttctcatagcttctagcataatgctgaaaca |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7905161 |
tttctcttcactctgcaattcgataaactttcctcactgaacacagaaagtactgcactccaagtcaccttctcatagcttctagcataatgctgaaaca |
7905260 |
T |
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| Q |
401 |
tgccaacatgtc |
412 |
Q |
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| T |
7905261 |
tgccaacatgtc |
7905272 |
T |
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