View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8848_low_3 (Length: 329)

Name: NF8848_low_3
Description: NF8848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8848_low_3
NF8848_low_3
[»] chr6 (4 HSPs)
chr6 (1-318)||(24947306-24947623)
chr6 (167-230)||(24954178-24954241)
chr6 (29-80)||(12664505-12664556)
chr6 (252-297)||(24954070-24954115)
[»] chr1 (2 HSPs)
chr1 (5-84)||(29552574-29552653)
chr1 (13-84)||(42738900-42738971)
[»] chr2 (2 HSPs)
chr2 (13-77)||(38398107-38398171)
chr2 (13-84)||(44189684-44189754)
[»] chr5 (1 HSPs)
chr5 (13-84)||(17174060-17174131)
[»] chr7 (1 HSPs)
chr7 (5-69)||(37219627-37219691)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 24947623 - 24947306
Alignment:
Q  1 caatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgaccggaagtagttctatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947623 caatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgaccggaagtagttctatt 24947524  T
Q  101 taatgaaacgaaattcagcatatgtgaatgggatattaggatccatccttttctatttaacaagagattgttactaagcaaccgttaaaaaattgagaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24947523 taatgaaacgaaattcagcatatgtgaatgggatattaggatccatccttttctatttaacatgagattgttactaagcaaccgttaaaaaattgagaga 24947424  T
Q  201 aagcatgcaattcaaacttaataacaaagatgcaaatgttgtactatcttcctttcaaattatataccagctacctttactaaatcattgataaatatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947423 aagcatgcaattcaaacttaataacaaagatgcaaatgttgtactatcttcctttcaaattatataccagctacctttactaaatcattgataaatatgc 24947324  T
Q  301 aactggcacttgattcat 318  Q
    ||||||||||||||||||    
T  24947323 aactggcacttgattcat 24947306  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 24954241 - 24954178
Alignment:
Q  167 attgttactaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaaga 230  Q
    |||| |||||||||||| |||||||  | | |||||||||||||||||||||||||||||||||    
T  24954241 attgctactaagcaacccttaaaaatctaacagaaagcatgcaattcaaacttaataacaaaga 24954178  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 12664505 - 12664556
Alignment:
Q  29 aaataggattaagcctccgaaattggtaatcataatcgaaagtgacatattt 80  Q
    |||| |||||||||| || ||||||||||||||||||||| || ||||||||    
T  12664505 aaatgggattaagccaccaaaattggtaatcataatcgaatgtaacatattt 12664556  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 24954115 - 24954070
Alignment:
Q  252 ctttcaaattatataccagctacctttactaaatcattgataaata 297  Q
    |||||||||| ||| |||||||||||| || |||||||||||||||    
T  24954115 ctttcaaattgtattccagctaccttttctgaatcattgataaata 24954070  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 29552574 - 29552653
Alignment:
Q  5 actaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 84  Q
    ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  29552574 actaaataacagtagaaaaatacaaaataggattaagcctccaaaattggtaatcataatcgaaagcaacatatttcgac 29552653  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 42738971 - 42738900
Alignment:
Q  13 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 84  Q
    |||||||||| ||| |||||| ||||||| || | |||||||||||||||||||||||| | ||||||||||    
T  42738971 acagctgaaacacagaaaataagattaagtcttcaaaattggtaatcataatcgaaagtaatatatttcgac 42738900  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 38398171 - 38398107
Alignment:
Q  13 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacata 77  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  38398171 acagttgaaacacacataataggattaagcctccaaaattggtaatcataatcgaaagtaacata 38398107  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 44189684 - 44189754
Alignment:
Q  13 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 84  Q
    ||||| ||||||||||||||| ||||||| |||  |||||||| |||| |||||||||| ||||||||||||    
T  44189684 acagcagaaaaacacaaaataagattaagtctctaaaattggt-atcacaatcgaaagtaacatatttcgac 44189754  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 17174131 - 17174060
Alignment:
Q  13 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 84  Q
    |||| ||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  17174131 acagttgaaacacataaaataggattaagcctccaaaattgataatcataatcgaaagtaatatatttcgac 17174060  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 37219627 - 37219691
Alignment:
Q  5 actaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaa 69  Q
    |||||||||||   || |||||||||||||||||||||||   ||||||||||||||||||||||    
T  37219627 actaaataacactagagaaacacaaaataggattaagcctaaaaaattggtaatcataatcgaaa 37219691  T

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