View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8848_low_6 (Length: 261)
Name: NF8848_low_6
Description: NF8848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8848_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 45936473 - 45936246
Alignment:
| Q |
15 |
gataattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
114 |
Q |
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| T |
45936473 |
gataattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
45936374 |
T |
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| Q |
115 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtgaatctatactcatatgatacatatacaatgctgacataaatttgtcaatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
45936373 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtgaatctatactcatatgatacatatacaatgctgacataaatatgtcattt |
45936274 |
T |
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| Q |
215 |
caaaatgtaaaataaaaatgctgtttta |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45936273 |
caaaatgtaaaataaaaatgctgtttta |
45936246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 45924525 - 45924375
Alignment:
| Q |
15 |
gataattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45924525 |
gataattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
45924426 |
T |
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| Q |
115 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtga |
165 |
Q |
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| T |
45924425 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtga |
45924375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 26303335 - 26303197
Alignment:
| Q |
17 |
taattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgtt |
116 |
Q |
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||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||| | || ||||||||||||||||| ||||| | |
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| T |
26303335 |
taattttgataacaaggccagggaaaacatcatcaggatcatgaatatgtggattctcttcaacaatataaggatcaccacacttttcacttattgtttg |
26303236 |
T |
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| Q |
117 |
gagtgtttcaccttctcccacaacatatatctcatcaca |
155 |
Q |
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| T |
26303235 |
aagtgtctctccctcgccaacaacgtatatctcatcaca |
26303197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 15818339 - 15818265
Alignment:
| Q |
168 |
ctatactcatatgatacatatacaatgctgacataaatttgtcaattcaaaatgtaaaataaaaatgctgtttta |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
15818339 |
ctatactcatatgatacatatacaatgctgacataaatatgtcatttcaaaatgtaaaataaaaatgctgtttta |
15818265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 15831448 - 15831376
Alignment:
| Q |
168 |
ctatactcatatgatacatatacaatgctgacataaatttgtcaattcaaaatgtaaaataaaaatgctgttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
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| T |
15831448 |
ctatactcatatgatacatatacaatgctgacataaatatgtcatttcaaaatgaaaaataaaaatgctgttt |
15831376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 42240150 - 42240290
Alignment:
| Q |
23 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
122 |
Q |
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||||||||||||| || |||||||||||||| ||||| |||||||||||| ||||||||||| || |||||||| |||||||| ||||| | || || |
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| T |
42240150 |
tgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttctacaataaatggatcaccacatttttcacttattgtatgaagagt |
42240249 |
T |
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| Q |
123 |
ttcaccttctcccacaacatatatctcatcacatgctttgt |
163 |
Q |
| |
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|| ||||| | || ||||||||||||||||| ||||||| |
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| T |
42240250 |
ctctccttcacgaaccacatatatctcatcacacgctttgt |
42240290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 12631272 - 12631380
Alignment:
| Q |
23 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
122 |
Q |
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||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||| |||||||| || ||| |||||| ||||| |||||||| ||||| |
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| T |
12631272 |
tgataacaagaccagggaagacatcatcagggtcatgaatatgaggattattctcaacaataaaaggatcattacacttatcactaattgtgttaagtgt |
12631371 |
T |
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| Q |
123 |
ttcaccttc |
131 |
Q |
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|||||||| |
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| T |
12631372 |
ctcaccttc |
12631380 |
T |
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