View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8848_low_7 (Length: 202)

Name: NF8848_low_7

Description: NF8848

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8848_low_7

[»] chr8 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 131; E-Value: 4e-68

Query Start/End: Original strand, 50 - 188

Target Start/End: Original strand, 34117845 - 34117983

Alignment:

Q	50	agagatgcttctaagatacactcaactttcaaattagaaccttggcatactttttacttgtcactgcattgtacaacattttccggtttgttccacgaca	149	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34117845	agagatgcttctaagatacactcaactttcaaattagaaccttggcatactttttacttgtcactgcactgtacaacattttccggtttgttccacgaca	34117944	T

Q	150	cattccaactgttcaaaagctttagacaatttgtttctt	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34117945	cattccaactgttcaaaagctttggacaatttgtttctt	34117983	T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 138 - 188

Target Start/End: Original strand, 21669033 - 21669083

Alignment:

Q	138	tgttccacgacacattccaactgttcaaaagctttagacaatttgtttctt	188	Q
		\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21669033	tgttacacgatacattccaactgttcagaagctttagacaatttgtttctt	21669083	T

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