View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8849_high_6 (Length: 223)
Name: NF8849_high_6
Description: NF8849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8849_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 40805918 - 40805726
Alignment:
| Q |
18 |
ttatcaaccttattaagatcggtttacattcatcatgaaagaattaaaatttactaactatttcttctttttaagtgattgcaaaaattcattttatgtt |
117 |
Q |
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| T |
40805918 |
ttatcaaccttattaagatcagtttacattcatcatgaaagaattaaaatttactaactatttcttctttttaagtgattgcaaaaattcattttatgtt |
40805819 |
T |
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| Q |
118 |
ttatttccgatatatataccatatttatttgtaatttgtcaattataataatctccttttgttatacaatgatattcacaggttaacaccaaa |
210 |
Q |
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| T |
40805818 |
ttatttccgacatatataccatatttatttgtaatctgtcaattataataatctccttttgttatacaatgatattcacaggttaacaccaaa |
40805726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 9518947 - 9519023
Alignment:
| Q |
133 |
ataccatatttatttgtaatttgtcaattataataatctccttttgttatacaatgatattcacaggttaacaccaaa |
210 |
Q |
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| T |
9518947 |
ataccatatttatttttcctttgttaattataataatttccttctgtcgtac-atgatagtcacaggttaacaccaaa |
9519023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 16335999 - 16335932
Alignment:
| Q |
57 |
agaattaaaatttactaactatttcttctttttaagtgattgcaaaaattcattttatgttttatttc |
124 |
Q |
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| T |
16335999 |
agaattaaaaattcctaacaatttcttctttttaaatgaatgtgtaaattcaatttatgttttatttc |
16335932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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