View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8849_low_1 (Length: 386)
Name: NF8849_low_1
Description: NF8849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8849_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 21613525 - 21613875
Alignment:
| Q |
14 |
cctgtgaacgagatgctattcataataagaggaaatcttgattcctacacaacggatggaggccgcactggtttcttcaactcatgtcgtattggcccag |
113 |
Q |
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| T |
21613525 |
cctgtgaacgagatgctattcataataagaggaaatcttgattcctacacaacggatggaggccgcactggtttcttcaactcatgtcgtattggcccag |
21613624 |
T |
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| Q |
114 |
gtgatttttgcggtgaggagcttttgacatgggcgttggatccacgaccgactatggtaattccttcttcgactcgaacggttaaagccatatctgaagt |
213 |
Q |
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| T |
21613625 |
gtgatttttgtggcgaggagcttttgacatgggcgttggatccacgaccgactatggtaattccttcttcgactcgaacggttaaagccatatctgaagt |
21613724 |
T |
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| Q |
214 |
agaagcctttgcacttatagcagaagacttgaagtttgttgcatctcagtttagaaggttgcatagcaagcaattgaggaacaagttaaggtttcactcg |
313 |
Q |
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| T |
21613725 |
agaagcctttgcacttatagcagaagacttgaagtttgttgcatctcagtttagaaggttgcatagcaagcaattgaggaacaagttaaggtttcactcg |
21613824 |
T |
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| Q |
314 |
caccaatggagaacgtgggctgcttgttttatacaagttgcatggagacgt |
364 |
Q |
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| T |
21613825 |
caccaatggagaacgtgggctgcttgttttatacaagttgcatggagacgt |
21613875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 40510796 - 40510452
Alignment:
| Q |
17 |
gtgaacgagatgctattcataataagaggaaatcttgattcctacacaacggatggaggccgcactggtttcttcaactcatgtcgtattggcccaggtg |
116 |
Q |
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| T |
40510796 |
gtgaacgaaatgctcttcataattagaggccatcttgattcttacacaacaaatggaggccgtgacggattcttcaactcatgtagaatcggtccaggcg |
40510697 |
T |
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| Q |
117 |
atttttgcggtgaggagcttttgacatgggcgttggatccacgaccgactatggtaattccttcttcgactcgaacggttaaagccatatctgaagtaga |
216 |
Q |
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| T |
40510696 |
atttctgtggtgaagagctcttaacatgggccttagatccaagaccaagtgtgatactcccttcctcaacaagaacagttaaagctttctcagaagtaga |
40510597 |
T |
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| Q |
217 |
agcctttgcacttatagcagaagacttgaagtttgttgcatctcagtttagaaggttgcatagcaagcaattgaggaacaagttaaggtttcactcgcac |
316 |
Q |
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| T |
40510596 |
agcttttgcactcatagctgaagatcttaagtttgttgcatctcaatttagaagactacatagtaaacaacttaggcataaattcagattttattcacac |
40510497 |
T |
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| Q |
317 |
caatggagaacgtgggctgcttgttttatacaagttgcatggaga |
361 |
Q |
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| T |
40510496 |
caatggagaacttgggctgcttgttttattcaagctgcatggaga |
40510452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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