View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8849_low_12 (Length: 210)

Name: NF8849_low_12
Description: NF8849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8849_low_12
NF8849_low_12
[»] scaffold0425 (1 HSPs)
scaffold0425 (14-194)||(8198-8378)
[»] chr3 (32 HSPs)
chr3 (14-194)||(6555159-6555339)
chr3 (14-194)||(6735118-6735298)
chr3 (14-194)||(6520853-6521033)
chr3 (18-194)||(8453815-8453991)
chr3 (18-194)||(6480680-6480853)
chr3 (19-194)||(8588899-8589071)
chr3 (18-194)||(6946433-6946609)
chr3 (18-194)||(6899256-6899432)
chr3 (21-194)||(5279821-5279991)
chr3 (18-194)||(7749170-7749346)
chr3 (104-194)||(6527683-6527773)
chr3 (18-194)||(6141454-6141630)
chr3 (18-194)||(6168059-6168235)
chr3 (18-194)||(13271238-13271414)
chr3 (15-128)||(6449482-6449602)
chr3 (18-194)||(6258370-6258546)
chr3 (18-194)||(6264853-6265029)
chr3 (23-194)||(6237921-6238092)
chr3 (43-194)||(5262945-5263093)
chr3 (18-194)||(6244461-6244637)
chr3 (18-194)||(6722764-6722940)
chr3 (18-194)||(6592038-6592214)
chr3 (18-194)||(5249330-5249503)
chr3 (18-121)||(5267287-5267390)
chr3 (14-65)||(6527631-6527682)
chr3 (18-124)||(6881754-6881860)
chr3 (18-194)||(8569655-8569831)
chr3 (156-194)||(6729555-6729593)
chr3 (18-194)||(6916269-6916445)
chr3 (159-194)||(6449630-6449665)
chr3 (135-194)||(6839722-6839781)
chr3 (22-99)||(4389639-4389716)
[»] chr1 (1 HSPs)
chr1 (33-194)||(35141070-35141231)


Alignment Details
Target: scaffold0425 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 8198 - 8378
Alignment:
Q  14 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||| ||||||||||||||||||||||||||||||||||||     
T  8198 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcatacactaagattagaagcttacctgataccatttgtatgttgtataattta 8297  T
Q  114 caaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||||||||| | | |||||  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8298 caaacactcttgttaaaaggttgtcgtcaattgactgagctcccttcaaatttttccaaactcatcaatttacgtcatctt 8378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 6555159 - 6555339
Alignment:
Q  14 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttg 113  Q
    ||||||||||||| | ||  |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6555159 tgtggatgagataggaaagctaaaacttttgcgttatctagaccttacatacactggtattaaaagcttacctgataccatttgtatgttgtataatttg 6555258  T
Q  114 caaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||||||||| | |   |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6555259 caaacactcttgttaaaagactgttatcaattgactgagctcccttcaaatttttccaaactcatcaatttacgtcatctt 6555339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 6735298 - 6735118
Alignment:
Q  14 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||| ||||||||||||||||||||||||||||||||||||     
T  6735298 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcatacactaagattagaagcttacctgataccatttgtatgttgtataattta 6735199  T
Q  114 caaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||||||||| | | |||||  | ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  6735198 caaacactcttgttaaaaggttgtcgtcaattgactgagctcccttcaaatttttccaaactcgtcaatttatgtcatctt 6735118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 6520853 - 6521033
Alignment:
Q  14 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||  ||||||||||||||||||||||||| ||||||||||     
T  6520853 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcttacaataagattgcaagcttacctgataccatttgtatgctgtataattta 6520952  T
Q  114 caaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||||||||| | | | ||  || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6520953 caaacactcttgttaaaaggctgccatcaattgactgagctcccttcaaatttttccaaactcatcaatttacgtcatctt 6521033  T

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Target: chr3; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 8453991 - 8453815
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  | ||| |||  |||||||||||||||||||||||| ||||||||||||    
T  8453991 gatgagataagcaatttaaaacttttgcgttatctagacctctcttacacatggattgaaatattacctgataccatttgtatgttgcataatttgcaaa 8453892  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||| ||  | | |||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  8453891 cactcttgctggaaggctgttgtgaattgacagagctcccttcaaatttttccaaactcgtcaatttacgtcatctt 8453815  T

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Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 6480680 - 6480853
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||| ||||   |||| |||||||||||||| ||||||||||||||||||||||||||    
T  6480680 gatgagataagcaatataaaacttttgcgctatcttgacctttctttcactgagattacaagcttacctgatagcatttgtatgttgtataatttgcaaa 6480779  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    || ||||||||  | | ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6480780 caatcttgttgcaagggtg---tgaattgactgagctcccttcaaatttttccaaactcatcaatttacgtcatctt 6480853  T

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Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 8589071 - 8588899
Alignment:
Q  19 atgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||| |||||    
T  8589071 atgagataagcaatttaaaacttttgcgttatctagacctttcttacactttgattacaagcttacctgataccatttgtatgttgtataatttacaaac 8588972  T
Q  119 actcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||||||  | | ||   | |  | |  ||||| |||||||||||||||||||||||||||||||| ||||||    
T  8588971 actcttgttggaacggtg---taacatcagagagctcccttcaaatttttccaaactcatcaatttacgccatctt 8588899  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6946609 - 6946433
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||  ||||| ||| ||||| ||| | |||||||||||||||||||||||||    
T  6946609 gatgagataagcaatttaaagcttttgcgttatctagacctttctcacactaatattacaaggttacccgattctatttgtatgttgtataatttgcaaa 6946510  T
Q  118 cactcttgttgagatgttgttatgaa-ttgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||| |||  | | || || ||| ||||| ||||| ||||||||||| || |||||| |||||||||||||||||    
T  6946509 cactcttattgcaaggctg-taggaagttgacagagctcccttcaaatttctcaaaactcgtcaatttacgtcatctt 6946433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6899432 - 6899256
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| |||| ||||||||||||||||||||    |||  ||||||||||||| ||||||||||| ||||||||||||| |    
T  6899432 gatgagataagaaatttaaagcttctgcgctatctagacctttcttacaccgagattgcaagcttacctgattccatttgtatgctgtataatttgcaga 6899333  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||  ||  | |||||| | || |||||||||| |||||| |||||| ||||||| ||||| |||||||||||    
T  6899332 cactcttactgcaaggttgttttaaactgactgagctcccttcagatttttgcaaactcgtcaatctacgtcatctt 6899256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 5279991 - 5279821
Alignment:
Q  21 gagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacac 120  Q
    ||||||||||| ||||| ||| || ||||||||||||||||||||||| | |||| |||| |||||||| |||||||| |||||||||||||||| ||||    
T  5279991 gagataagcaacttaaagcttctgtgttatctagacctttcttacactggaattacaagcctacctgattccatttgtgtgttgtataatttgcagacac 5279892  T
Q  121 tcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||| |||  | | ||   |  |||||||||||| ||||||||||||| ||||||  |||||||||||||||||    
T  5279891 tcttattgctaggatg---tagattgactgagctcccttcaaatttttacaaacttgtcaatttacgtcatctt 5279821  T

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Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 7749346 - 7749170
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| |||| ||||||||||||||| |||||   |||  |||||||||  || ||||||||||| ||||||||||||| |    
T  7749346 gatgagataagaaatttaaagcttctgcgctatctagacctttctcacactgagattgcaagcttacccaattccatttgtatgctgtataatttgcaga 7749247  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||||||  |   ||||    |||| |||||||||||||| |||||| |||||||||||||||||||||||||    
T  7749246 cactcttgttggaacaatgtttcagattggctgagctgccttcagatttttgcaaactcatcaatttacgtcatctt 7749170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 6527683 - 6527773
Alignment:
Q  104 gtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||||||||||| ||||||||| || |||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6527683 gtataatttgcaaactctcttgttgggaggttgtggtgaattgactgagctcccttcaaatttttccaaactcatcaatttacgtcatctt 6527773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6141630 - 6141454
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| |||| ||||||||||||||||||||    |||| |||||||||| || ||||||||| | ||||||||||||| |    
T  6141630 gatgagataagaaatttaaagcttctgcgctatctagacctttcttacacggagattacaagcttacctaattccatttgtaagctgtataatttgcata 6141531  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    | |||||  ||  |   |||| | ||||||||||||| || |||||||||| ||||||| |||||||||||||||||    
T  6141530 ccctcttactggaagaatgttttaaattgactgagctcccatcaaatttttgcaaactcgtcaatttacgtcatctt 6141454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6168235 - 6168059
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| | || ||||||||||||||||||||    |||| |||||||||| || ||||||||||| ||||||||||||| |    
T  6168235 gatgagataagaaatttaaagcttctacgatatctagacctttcttacaccgacattacaagcttacctaattccatttgtatgctgtataatttgcata 6168136  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    | |||||  ||  |   |||| | ||||||||||||| || |||||||||  |||||||||||||||||||||||||    
T  6168135 cgctcttactggaagaatgttttaaattgactgagctcccatcaaattttggcaaactcatcaatttacgtcatctt 6168059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 13271238 - 13271414
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| || ||||| ||| |||| ||||||||||||||||||||    |||| ||||||||||||| ||||||||||||||||||||||||| |    
T  13271238 gatgagataagaaacttaaagcttctgcgctatctagacctttcttacaccgagattacaagcttacctgattccatttgtatgttgtataatttgcata 13271337  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    | |||||| ||| |   |||| | || |   |||||| ||  ||||||||| |||||||||||||||||||||||||    
T  13271338 cgctcttgctgaaagaatgttttaaactacttgagctcccgccaaatttttgcaaactcatcaatttacgtcatctt 13271414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 6449482 - 6449602
Alignment:
Q  15 gtggatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgt-------attaaaagcttacctgataccatttgtatgttgtat 107  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |  |       |||| |||||||||||||||||||||| ||||||||    
T  6449482 gtggatgagataagcaatttaaagcttttacgttatctagacctttctcacaataatcaataatattacaagcttacctgataccatttgtgtgttgtat 6449581  T
Q  108 aatttgcaaacactcttgttg 128  Q
    |||||||||||||||||||||    
T  6449582 aatttgcaaacactcttgttg 6449602  T

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Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6258546 - 6258370
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| || ||||| ||| |||| ||||||||||||||||||||    |||| ||| ||||||||| ||||||||||||||||||||||||| |    
T  6258546 gatgagataagaaacttaaagcttctgcgctatctagacctttcttacaccgagattacaagtttacctgattccatttgtatgttgtataatttgcata 6258447  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||  ||  |   |||| | || |||||||||| || |||||||||  ||| |||||||||||| ||||||||    
T  6258446 cactcttactggaagaatgttttaaactgactgagctcccatcaaattttcacaatctcatcaatttatgtcatctt 6258370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6265029 - 6264853
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| |||| ||||||||||||||||||||    |||| |||||||||| || ||||||||| | |||||| |||||| |    
T  6265029 gatgagataagaaatttaaagcttctgcgctatctagacctttcttacacagagattacaagcttacctaattccatttgtaagctgtatagtttgcata 6264930  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    | |||||  ||  |   |||| | ||||||||||||| || |||||||||| ||||||| |||||||||||||||||    
T  6264929 ccctcttactggaagaatgttttaaattgactgagctcccatcaaatttttgcaaactcgtcaatttacgtcatctt 6264853  T

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Target: chr3; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 6238092 - 6237921
Alignment:
Q  23 gataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactc 122  Q
    |||||| |||||||| |||||| | |||||||||||||||||||||   |||| |||||||||| || ||||||| ||||||||||||||||| || |||    
T  6238092 gataagaaatttaaagcttttgtgctatctagacctttcttacactgaaattacaagcttacctaattccatttgcatgttgtataatttgcatacgctc 6237993  T
Q  123 ttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||   |  |   |||| | |||||||| |||| || |||||||||| |||||| ||||||||||||||||||    
T  6237992 ttaccggaagaatgttttaaattgactaagctcccatcaaatttttgcaaacttatcaatttacgtcatctt 6237921  T

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Target: chr3; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 5263093 - 5262945
Alignment:
Q  43 tgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatga 142  Q
    |||||||||||||||||||||||||| | |||| |||| |||||||| |||||| | |||||||||||||||| |||||||| |||  | | ||   | |    
T  5263093 tgcgttatctagacctttcttacactgggattacaagcctacctgattccatttatgtgttgtataatttgcagacactcttattgctaggatg---taa 5262997  T
Q  143 attgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||| ||||| |||||| ||||||  |||||| |||||||||| ||||||    
T  5262996 attgacggagctcccttcagatttttataaactcgtcaatttacgccatctt 5262945  T

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Target: chr3; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6244637 - 6244461
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| || ||||| ||| |||| ||||||||||||||||||||    |||| |||||||||| || ||||||||||||||||||||||||| |    
T  6244637 gatgagataagaaacttaaagcttctgcgctatctagacctttcttacaccgagattacaagcttacctaattccatttgtatgttgtataatttgcata 6244538  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    | |||||  ||  |   |||| | || |   |||||| ||  ||||||||| |||||||||||||||||||||||||    
T  6244537 cgctcttactggaagaatgttttaaactacttgagctcccgccaaatttttgcaaactcatcaatttacgtcatctt 6244461  T

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Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 6722764 - 6722940
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| ||||||   |||  |||||||||| || ||||||||||| | ||||||||||| |    
T  6722764 gatgagataaggaatttaaagcttttgcgctatctagacctttcctacactgacattgtaagcttacctaattccatttgtatgctatataatttgcaga 6722863  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||| |||  |   || | | |||||||| |||| |||||| || | | ||||||| ||||||||||| |||||    
T  6722864 cactcttattggaagagtgctttaaattgactaagctaccttcagatatctacaaactcgtcaatttacgttatctt 6722940  T

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Target: chr3; HSP #22
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 6592038 - 6592214
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| |||| ||||||||||||||| | |||   |||  |||||||||| || ||||||||| | |||||||||||||||    
T  6592038 gatgagataagaaatttaaagcttctgcgctatctagacctttctaaaactgagattgcaagcttacctaattccatttgtacgctgtataatttgcaaa 6592137  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    || |||| |||  |   |||| | ||||||| || || |||||| |||||  ||||||||||||||| || ||||||    
T  6592138 cattcttattggaagaatgttttaaattgaccgaactcccttcagattttcacaaactcatcaatttgcgccatctt 6592214  T

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Target: chr3; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 5249503 - 5249330
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    |||||| ||||||||||||| |||||||||||||||||||| ||||||||  | ||| |||| || |||||| |||||||||   | |||||||| ||||    
T  5249503 gatgaggtaagcaatttaaagcttttgcgttatctagacctatcttacacaagaattgaaagtttgcctgattccatttgtaacctatataatttacaaa 5249404  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||  | |||| |  |||   |  |||||||||||| |||||| |||||| |||||| | |||||||| |||||||    
T  5249403 cactgctattgaaaaattg---tccattgactgagctcccttcagatttttacaaacttagcaatttacatcatctt 5249330  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 5267390 - 5267287
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    |||||||||||||||||||| |||||||||||||||||||| |||  |||    |||||||| || |||||| |||||||||   |||||||||| || |    
T  5267390 gatgagataagcaatttaaagcttttgcgttatctagacctgtctctcacaaagattaaaaggttgcctgattccatttgtaacctgtataatttacaga 5267291  T
Q  118 cact 121  Q
    ||||    
T  5267290 cact 5267287  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 6527631 - 6527682
Alignment:
Q  14 tgtggatgagataagcaatttaaaacttttgcgttatctagacctttcttac 65  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||    
T  6527631 tgtggatgagataagaaacttaaaacttttgcgttacctagacctttcttac 6527682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6881860 - 6881754
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    |||| |||||| |||||||| ||| |||| ||||| ||||||||  |||||   |||  |||||||||| || |||||||||||||||||||||| || |    
T  6881860 gatgggataagaaatttaaagcttctgcgctatctggacctttcgcacactgagattgcaagcttacctaattccatttgtatgttgtataatttacaga 6881761  T
Q  118 cactctt 124  Q
    |||||||    
T  6881760 cactctt 6881754  T

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Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 8569655 - 8569831
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||| |||||||||| |||||||| |||||||| ||  ||  |||    |||||||| || |||||| ||||||||| |||||||||||| ||||    
T  8569655 gatgagatatgcaatttaaagcttttgcgctatctagatctgactcgcacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaa 8569754  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||  | |||  |   |||| |||||||||  |||| |||||| |||||| ||||||   ||||||||| ||||||    
T  8569755 cactaatattggaagaatgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacgccatctt 8569831  T

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Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 6729555 - 6729593
Alignment:
Q  156 ccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  6729555 ccttcaaatttttccaaactcatcaatctacgtcatctt 6729593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6916445 - 6916269
Alignment:
Q  18 gatgagataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaa 117  Q
    ||||||||||| |||||||| ||| |||| |||||||| ||||| ||||||   |||| |||||||||   | || |||||||| | |||||||| || |    
T  6916445 gatgagataagaaatttaaagcttctgcgctatctagatctttcgtacactgagattacaagcttaccgatttccgtttgtatgatatataatttacaga 6916346  T
Q  118 cactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||| |||  |   ||||   ||||||||||||| |||| | |||||  ||||||| |||| ||||| ||||||    
T  6916345 cactcttattggaagaatgttggaaattgactgagctccctttagattttggcaaactcgtcaacttacgccatctt 6916269  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 6449630 - 6449665
Alignment:
Q  159 tcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    |||||||||||||||||||||||| |||||||||||    
T  6449630 tcaaatttttccaaactcatcaatctacgtcatctt 6449665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 6839722 - 6839781
Alignment:
Q  135 tgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
    ||||||||||||||||| || ||||||||||||| ||||||  ||| |||||| ||||||    
T  6839722 tgttatgaattgactgaactcccttcaaatttttacaaactagtcagtttacgccatctt 6839781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 4389639 - 4389716
Alignment:
Q  22 agataagcaatttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgta 99  Q
    |||||||||||||||| ||| |||||||||||||||| |||  |||    |||||||| || |||||| |||||||||    
T  4389639 agataagcaatttaaagcttatgcgttatctagacctatctctcacaaagattaaaaggttgcctgattccatttgta 4389716  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 35141070 - 35141231
Alignment:
Q  33 ttaaaacttttgcgttatctagacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagat 132  Q
    ||||| ||| |||| ||||||||||||||||||||    |||| |||||||||| || ||||||||||||||||||||||||| || |||||  ||  |     
T  35141070 ttaaagcttatgcgctatctagacctttcttacaccgagattacaagcttacctaattccatttgtatgttgtataatttgcatacgctcttactggaag 35141169  T
Q  133 gttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt 194  Q
      |||| | ||  || |||||| || |||||||||  |||||||||||||||| ||||||||    
T  35141170 aatgttttaaaccgattgagctcccatcaaattttcgcaaactcatcaatttatgtcatctt 35141231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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