View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8849_low_5 (Length: 275)
Name: NF8849_low_5
Description: NF8849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8849_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 12074480 - 12074720
Alignment:
| Q |
19 |
agtagtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatcccnnnnnnnnnnctcttcactttcgttgttgattcagctca |
118 |
Q |
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| T |
12074480 |
agtagtagcattcacagtttaaaaagttcaattttattttagaaatcacaactttgatcccttttttctctctcttcattttctttgttgattcagctca |
12074579 |
T |
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| Q |
119 |
aactaatgtcgtttcattgagttgcaactctacatggatttgagaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaaag |
218 |
Q |
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| T |
12074580 |
aactaatgtcgtttcattgagttgcaattctacatggattttagaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaaag |
12074679 |
T |
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| Q |
219 |
gtctgaactatgcaaactctaatcgtggtttctgattgttc |
259 |
Q |
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| T |
12074680 |
gtctgaactatgcaaactctaatcgtggtttctgattgttc |
12074720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 12054015 - 12054251
Alignment:
| Q |
21 |
tagtagcattgacagtttaaaaagttcaattttatttt-agaaatcacaactttgatcccnnnnnnnnnnctcttcactttcgttgttgattcagctcaa |
119 |
Q |
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| T |
12054015 |
tagtagcattgacaggttaaaaagttcaattttttttttagaaatcacaactttgatcccttttttt---ctcttcattttcttcgttgattcagctcaa |
12054111 |
T |
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| Q |
120 |
actaatgtcgtttcattgagttgcaactcta---catggatttgagaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaa |
216 |
Q |
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| T |
12054112 |
actaatgtcgtttcattgagctgctactctacttcttggatttgagaatttaatttcatcatttgcaaaccctaatgg-------tttagacatacttaa |
12054204 |
T |
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| Q |
217 |
aggtctgaactatgcaaactctaatcgtggtttctgattgttcatct |
263 |
Q |
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| T |
12054205 |
aggtccgaactatgccaactataatcgtagtttttgattgttcatct |
12054251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 12075889 - 12076121
Alignment:
| Q |
22 |
agtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatcccnnnnnnnnnnctcttcactttcgttgttgattcagctcaaac |
121 |
Q |
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| T |
12075889 |
agtagcattgacagtttaaaaagttcaatttt-ttttagacgtcacaactttgatcccttttttt---ctcttcattttcttcgttgattcaactcaaac |
12075984 |
T |
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| Q |
122 |
taatgtcgtttcattgagttgcaactctac---atggatttgagaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaaag |
218 |
Q |
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| T |
12075985 |
gaatgtcgtttcattgagctgcaa-tctactttttggatttgagaaattaatttcatcatttgcaaaccctaatgg-------tttagacatatttaaag |
12076076 |
T |
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| Q |
219 |
gtctgaactatgcaaactctaatcgtggtttctgattgttcatct |
263 |
Q |
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| T |
12076077 |
gtctgaactatgcaaactcttatcgtagtttttgattgctcatct |
12076121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12062760 - 12062818
Alignment:
| Q |
21 |
tagtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatccc |
79 |
Q |
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| T |
12062760 |
tagtagcattgacagtttaaaatgttcaattttttttttgaaatcacaactttgatccc |
12062818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 12059454 - 12059502
Alignment:
| Q |
153 |
tggatttgagaaattcatttcatcatttgcaaaccataatggtttagac |
201 |
Q |
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| T |
12059454 |
tggattttagaaattcattccatcatttgcaaacactaatggttcagac |
12059502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 12064824 - 12064872
Alignment:
| Q |
153 |
tggatttgagaaattcatttcatcatttgcaaaccataatggtttagac |
201 |
Q |
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| T |
12064824 |
tggattttagaaattcattccatcatttgcaaacactaatggttcagac |
12064872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 20951 - 20994
Alignment:
| Q |
35 |
gtttaaaaagttcaattttattttagaaatcacaactttgatcc |
78 |
Q |
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| T |
20951 |
gtttaaaaagttcaatctttttttagaaatcacaactttgatcc |
20994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 16430969 - 16431012
Alignment:
| Q |
35 |
gtttaaaaagttcaattttattttagaaatcacaactttgatcc |
78 |
Q |
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| T |
16430969 |
gtttaaaaagttcaatctttttttagaaatcacaactttgatcc |
16431012 |
T |
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