View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8849_low_6 (Length: 275)
Name: NF8849_low_6
Description: NF8849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8849_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 38307076 - 38307333
Alignment:
| Q |
1 |
ttttccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307076 |
ttttccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttga |
38307175 |
T |
|
| Q |
101 |
tcaacaacaatgatatttgtaacatgatttccaccacaatcaatggctctaccaagacaaaaacaataaccaaagaatatgatcagatagaaaatctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38307176 |
tcaacaacaatgatatttgtaacatgatttccaccacaatcaatggctctaccaagacaaaaacaataaccaaagaatatgatcagatggaaaatctttt |
38307275 |
T |
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| Q |
201 |
gttgaggaggaaaacccattatagttgatttgtgttgagtgagtaatgtgacattatg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38307276 |
gttgaggaggaaaacccattatagttgatttgtgttgagtgagttgtgtgacattatg |
38307333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 38302865 - 38303120
Alignment:
| Q |
1 |
ttttccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttga |
100 |
Q |
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||||||||||||||||||||| |||||||| |||| ||| || || |||||||||||||||| | ||||||||||||||||| || |||||||||||| |
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| T |
38302865 |
ttttccaggatttatgtgaattttaacccaatgatcatttttgttttttattgaatcaatggcaggctgaatcattttgaatgccccccttccttgttga |
38302964 |
T |
|
| Q |
101 |
tcaacaacaatgatatttgtaacatgatttccaccacaatcaatggctctaccaagacaaaaacaataaccaaagaatatgatcagatagaaaatctttt |
200 |
Q |
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| T |
38302965 |
tcaacaataatggtatttgtaacatgatttccaccacagtcaatggctataccaagacaaaaacaataaccaatgaatatgatcaaatggaaaatcattg |
38303064 |
T |
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| Q |
201 |
gttgaggaggaaaacccattatagttgatttgtgttgagtgagtaatgtgacattatg |
258 |
Q |
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| T |
38303065 |
gtcgaagagataaccaaattatagttgatttgtgtggagtgagta--gtgacattatg |
38303120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38295577 - 38295761
Alignment:
| Q |
1 |
ttttccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttga |
100 |
Q |
| |
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||||||||||||||||||||| |||||||| |||| ||| || || |||||||||||||||| | |||||| |||||||| | ||| ||||||||||| |
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| T |
38295577 |
ttttccaggatttatgtgaattttaacccaatgatcatttttgttttttattgaatcaatggcaggctgaatctttttgaattccccttttccttgttga |
38295676 |
T |
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| Q |
101 |
tcaacaacaatgatatttgtaacatgatttccaccacaatcaatggctctaccaagacaaaaacaataaccaaagaatatgatca |
185 |
Q |
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| T |
38295677 |
tcaacaataatggcatttctaacatgatttccaccacagtcaatggctataccaagacaaaaacaacaactaatgaatatgatca |
38295761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 41043189 - 41043325
Alignment:
| Q |
5 |
ccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttgatcaa |
104 |
Q |
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||||||||||| | |||| ||| ||| |||||||| | | || ||| |||||||||||| |||||| ||| |||||||||| |||||||||| |||| |
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| T |
41043189 |
ccaggatttatattaatcataatccattgattattttgactctttatagaatcaatggcagcttgaattgtttggaatgctccttttccttgttggtcaa |
41043288 |
T |
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| Q |
105 |
caacaatgatatttgtaacatgatttccaccacaatc |
141 |
Q |
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||| ||| |||||| ||| ||||| ||||||||||| |
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| T |
41043289 |
caatgatggtatttgcaacttgattcccaccacaatc |
41043325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 18742812 - 18742658
Alignment:
| Q |
17 |
tgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttgatcaacaacaatgatat |
116 |
Q |
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|||||||||| ||| ||| |||||||| | ||||||||||| || ||||||||| ||||||| ||||||||||| |||||||||| |||| | | |
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| T |
18742812 |
tgaatcttaatccagcgatcattgttatgctttattgaatcaacagcttgttgaatccttttgaacattcctcttcctttttgatcaacagtaatggttt |
18742713 |
T |
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| Q |
117 |
ttgtaacatgatttccaccacaatcaatggctctaccaagacaaaaacaataacc |
171 |
Q |
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||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18742712 |
ttgcaacaagatttccaccacaatcaatagctctaccaagacaaaaacaataacc |
18742658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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