View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8849_low_8 (Length: 240)
Name: NF8849_low_8
Description: NF8849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8849_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33163477 - 33163264
Alignment:
| Q |
1 |
cgatgaccggaactgaaattatcaacataccggacacatagttgctccaatggagcagtggtaccaccagaagtcacacaaacaattcttctagctttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33163477 |
cgatgaccggaactgaaattatcaacataccggacacatagttgctccaatggagcagtggtaccaccagaagtcacacaaacaattcttctagctttcc |
33163378 |
T |
|
| Q |
101 |
cattttcagaggtcccaaaaaccaccaaacatcatttttacaagggaagcataaagcaacacat-nnnnnnntgcaaatgtgaatgctatagttgatgct |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| |
|
|
| T |
33163377 |
cattttcagaggtcccaaaaaccaccaaacatcatttttacaagggaagcataaagcaacatataaaaaatatgcaaatgtgaatgctatagttgaagct |
33163278 |
T |
|
| Q |
200 |
aacttacctaatga |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33163277 |
aacttacctaatga |
33163264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 46162694 - 46162777
Alignment:
| Q |
41 |
gttgctccaatggagcagtggtaccaccagaagtcacacaaacaattcttctagctttcccattttcagaggtcccaaaaaccac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
46162694 |
gttgctccaatggagcagtggtaccaccagaagttacacaaacaattctcctagcttccccattttctgaggt-ccaaaaaccac |
46162777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University