View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8850_high_12 (Length: 241)
Name: NF8850_high_12
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_high_12 |
 | |
|
| [»] scaffold0009 (3 HSPs) |
| | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 22981677 - 22981461
Alignment:
| Q |
19 |
cataccatacatgcttgtattaataataattgaa---aactttatattgaattgagatattattgttcatattttaaatccttgatttagcagatattaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22981677 |
cataccatacatgcttgtattaataatgattgagttcaactttatattgaattgagatattattgttcatattttaaatccttgatttagcagatattaa |
22981578 |
T |
|
| Q |
116 |
ccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaatatccattgctacatttcataggcttcaaatgagcagagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22981577 |
ccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagaggatatccattgctacatttcataggcttcaaatgagcagtgt |
22981478 |
T |
|
| Q |
216 |
tataggtccaacaccaa |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22981477 |
tataggtccaacaccaa |
22981461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 22933677 - 22933833
Alignment:
| Q |
74 |
attattgttcatattttaaatccttgatttagcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagag |
173 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
22933677 |
attatggttcacattttaaatcctt---tta-cagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagag |
22933772 |
T |
|
| Q |
174 |
aatatccattgctacatttcataggcttcaaatgagcagagttataggtccaacaccaaac |
234 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
22933773 |
gatatccattgctacatttcataggcttaatatgagcagagttataggtccaacaccaaac |
22933833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 21351314 - 21351467
Alignment:
| Q |
74 |
attattgttcatattttaaatccttgatttagcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagag |
173 |
Q |
| |
|
|||||||||||| ||| |||||||| | |||||||||||| || |||||||||||||||||||| ||| ||| |||| | ||||||| ||| ||||| |
|
|
| T |
21351314 |
attattgttcatgtttaaaatcctt----ttgcagatattaactaacggaatttaccgaagcattgaacatcgagcaacaatcaattcaatgaatgagag |
21351409 |
T |
|
| Q |
174 |
aatatccattgctacatttcataggcttcaaatgagcagagttataggtccaacacca |
231 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| | || |||||||||||||| |
|
|
| T |
21351410 |
gatatcaattgctacatttcatagggctcaaatgagcaaaattctaggtccaacacca |
21351467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 21264735 - 21264859
Alignment:
| Q |
105 |
gcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaatatccattgctacatttcataggcttcaa |
204 |
Q |
| |
|
||||||| ||||||| ||| |||| |||||||| || ||| ||| || || || |||||||| ||||| || |||||||| ||||||| || | |||| |
|
|
| T |
21264735 |
gcagatactaaccaacggagtttatcgaagcatcgaacatcgagctacggtgaactcaaagaaagagaggatttccattgcatcatttcacagacctcaa |
21264834 |
T |
|
| Q |
205 |
atgagcagagttataggtccaacac |
229 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
21264835 |
atgagcaaagttataggtccaacac |
21264859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 21250900 - 21250994
Alignment:
| Q |
105 |
gcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaatatccattgctacatttcataggc |
199 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||| ||| ||| |||||| |||||| | || || || || ||||||||| |||||||||||| |
|
|
| T |
21250900 |
gcagatagtaacaaatggaatataccgaagcattgaacatcgagcaacagttaattcagaaaaagaaaggatttccattgctgcatttcataggc |
21250994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 22609 - 22485
Alignment:
| Q |
105 |
gcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaatatccattgctacatttcataggcttcaa |
204 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| ||| ||| || || |||||| |||| | ||| || ||||||||| ||||||| || | ||| |
|
|
| T |
22609 |
gcagatattgacaaatggaatttatcgaagcattgaacatcgagctacggttaattcagagaaagcgaggatttccattgctgcatttcacagacctcag |
22510 |
T |
|
| Q |
205 |
atgagcagagttataggtccaacac |
229 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
22509 |
atgagcaaagttataggtccaacac |
22485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 257441 - 257379
Alignment:
| Q |
114 |
aaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaat |
176 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| |||||| |||||| ||||||||||||| |
|
|
| T |
257441 |
aaccaatggaatttaccgaagcattgaacatcgagcaacagtgaattcagagaaggagagaat |
257379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 215058 - 214979
Alignment:
| Q |
115 |
accaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaatatccattgctacatttca |
194 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| ||| || ||||| ||||||||||||| || ||||| ||||||| |
|
|
| T |
215058 |
accaatggaatttaccgaagcattgaacatcgagcaacggtgaattcggagaaggagagaatctctgttgctgcatttca |
214979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 9780 - 9869
Alignment:
| Q |
105 |
gcagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagagaatatccattgctacatttca |
194 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||| ||| ||| |||||| |||||| ||||||||| ||||| || ||||||||||| |
|
|
| T |
9780 |
gcagatattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca |
9869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University