View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8850_high_2 (Length: 569)
Name: NF8850_high_2
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 550
Target Start/End: Complemental strand, 1681426 - 1680892
Alignment:
| Q |
16 |
aatactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
115 |
Q |
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| T |
1681426 |
aatactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
1681327 |
T |
|
| Q |
116 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681326 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
1681227 |
T |
|
| Q |
216 |
aatttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatc |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681226 |
aatatgaatgctgaaattgttgctggaattattgaaaacaagcaagacgatgtagattatcttacatggacattcatgtacaggcgtctcacccagaatc |
1681127 |
T |
|
| Q |
316 |
ccaactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681126 |
ccaactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtg |
1681027 |
T |
|
| Q |
416 |
tgtttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactataacataagttacacaacaattgaaaggttttcatca |
515 |
Q |
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| T |
1681026 |
tgtttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactataacataagttacacaacaattgaaaggttttcatca |
1680927 |
T |
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| Q |
516 |
tctattacttcaaacacaaaaatgaaggggctttt |
550 |
Q |
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| T |
1680926 |
tatattacttcaaacacaaaaatgaaggggctttt |
1680892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Original strand, 2799304 - 2799836
Alignment:
| Q |
18 |
tactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799304 |
tactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
2799403 |
T |
|
| Q |
118 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
217 |
Q |
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| T |
2799404 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
2799503 |
T |
|
| Q |
218 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatccc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799504 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgttgttgattatcttacatggacattcatgtacaggcgtctcacccagaatccc |
2799603 |
T |
|
| Q |
318 |
aactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtg |
417 |
Q |
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| T |
2799604 |
aactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtg |
2799703 |
T |
|
| Q |
418 |
tttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactataacataagttacacaacaattgaaaggttttcatcatc |
517 |
Q |
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| T |
2799704 |
tttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactataacataagttacacaacaattgaaaggttttcatcatt |
2799803 |
T |
|
| Q |
518 |
tattacttcaaacacaaaaatgaaggggctttt |
550 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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| T |
2799804 |
tattacttcaaacactaaaatgaaggggctttt |
2799836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 32 - 544
Target Start/End: Original strand, 29268494 - 29269006
Alignment:
| Q |
32 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
131 |
Q |
| |
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|||||| |||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||| || ||| |||||||||| ||||||||||||||| |
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| T |
29268494 |
gaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtcctttagtagacaattctggaaaatgtgtcatcttatgc |
29268593 |
T |
|
| Q |
132 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
231 |
Q |
| |
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|| |||||| || ||||| ||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| || || || || ||||||||||||| |
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| T |
29268594 |
cacgcacctcgcaaagagtactacaagaagtttctgtatgaagcattcccagttgaaagccatcttcatcacttcttgcacgacaacttgaatgctgaaa |
29268693 |
T |
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| Q |
232 |
ttgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
331 |
Q |
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|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
29268694 |
ttgttgctgggattattgaaaacaagcaagatgctgttgattatcttacatggacattcatgtacaggaggctcacacagaatcccaactattacaattt |
29268793 |
T |
|
| Q |
332 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgtttctatagaggat |
431 |
Q |
| |
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||||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||| || || ||||||||||||||||||||||| |||||| |
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| T |
29268794 |
acaaggagtaagtcacagacatctttctgaccacctctcagagatggtggaaaatacattgagcgacttagaagcaagcaagtgtgtttctattgaggat |
29268893 |
T |
|
| Q |
432 |
gatatacatttgtctcctcttaatcttggaatgatatcatcctactataacataagttacacaacaattgaaaggttttcatcatctattacttcaaaca |
531 |
Q |
| |
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||||| | | |||||||| || |||||||||||| | || || ||| |||| |||||||||||||| ||||||||||||||||| | |||||||| | |
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| T |
29268894 |
gatatggacctttctcctctaaaccttggaatgatagcttcatattattacatcagttacacaacaatcgaaaggttttcatcatcgttgacttcaaaaa |
29268993 |
T |
|
| Q |
532 |
caaaaatgaaggg |
544 |
Q |
| |
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||||||||||||| |
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| T |
29268994 |
caaaaatgaaggg |
29269006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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