View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8850_low_1 (Length: 657)

Name: NF8850_low_1
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8850_low_1
NF8850_low_1
[»] chr6 (13 HSPs)
chr6 (396-649)||(24126332-24126586)
chr6 (215-330)||(24126651-24126766)
chr6 (215-264)||(24125972-24126021)
chr6 (213-268)||(7193336-7193391)
chr6 (215-268)||(3543058-3543111)
chr6 (276-329)||(4311122-4311175)
chr6 (215-268)||(33018167-33018220)
chr6 (215-268)||(33480623-33480676)
chr6 (220-268)||(3542819-3542867)
chr6 (220-268)||(22582474-22582522)
chr6 (220-268)||(22587305-22587353)
chr6 (214-262)||(29998176-29998224)
chr6 (220-268)||(33479701-33479749)
[»] chr4 (13 HSPs)
chr4 (396-649)||(47377032-47377286)
chr4 (215-330)||(47376852-47376967)
chr4 (215-268)||(38694702-38694755)
chr4 (213-268)||(9939366-9939421)
chr4 (214-264)||(47377597-47377647)
chr4 (213-268)||(26611278-26611333)
chr4 (214-268)||(11417686-11417740)
chr4 (214-268)||(21166370-21166424)
chr4 (214-268)||(29651327-29651381)
chr4 (215-268)||(11417932-11417985)
chr4 (215-268)||(36865712-36865765)
chr4 (215-264)||(45235959-45236008)
chr4 (215-264)||(45330565-45330614)
[»] chr1 (9 HSPs)
chr1 (399-496)||(41883445-41883543)
chr1 (237-330)||(41882190-41882284)
chr1 (229-330)||(41884162-41884263)
chr1 (214-295)||(51974436-51974517)
chr1 (213-268)||(43737973-43738028)
chr1 (214-268)||(48972440-48972494)
chr1 (215-268)||(16270207-16270260)
chr1 (215-268)||(23440860-23440913)
chr1 (399-443)||(41882913-41882957)
[»] chr8 (7 HSPs)
chr8 (244-330)||(42915743-42915829)
chr8 (213-295)||(41859308-41859390)
chr8 (215-262)||(43924490-43924537)
chr8 (210-268)||(5034893-5034951)
chr8 (215-261)||(12349967-12350013)
chr8 (214-268)||(34992259-34992313)
chr8 (215-268)||(38023624-38023677)
[»] chr2 (10 HSPs)
chr2 (233-330)||(4058949-4059046)
chr2 (214-268)||(37547997-37548051)
chr2 (221-267)||(44154978-44155024)
chr2 (214-295)||(21471016-21471097)
chr2 (211-264)||(30545434-30545487)
chr2 (215-264)||(37546563-37546612)
chr2 (214-262)||(41043329-41043377)
chr2 (215-268)||(14573261-14573314)
chr2 (215-268)||(21471949-21472002)
chr2 (215-267)||(30544727-30544779)
[»] chr7 (13 HSPs)
chr7 (229-331)||(26246310-26246412)
chr7 (215-295)||(668179-668259)
chr7 (213-268)||(37468908-37468963)
chr7 (214-268)||(38071897-38071951)
chr7 (214-268)||(38778853-38778907)
chr7 (215-273)||(46759252-46759310)
chr7 (215-268)||(17145622-17145675)
chr7 (215-264)||(27599211-27599260)
chr7 (215-264)||(27600094-27600143)
chr7 (215-268)||(37469000-37469053)
chr7 (215-268)||(38779558-38779611)
chr7 (220-268)||(7677804-7677852)
chr7 (215-263)||(46756270-46756318)
[»] scaffold0041 (2 HSPs)
scaffold0041 (215-268)||(27221-27274)
scaffold0041 (215-268)||(27570-27623)
[»] chr5 (5 HSPs)
chr5 (220-268)||(33001937-33001985)
chr5 (245-329)||(33685775-33685859)
chr5 (214-268)||(8204119-8204173)
chr5 (214-268)||(33002811-33002865)
chr5 (215-268)||(15184012-15184065)
[»] chr3 (5 HSPs)
chr3 (220-268)||(32490190-32490238)
chr3 (214-268)||(36750432-36750486)
chr3 (212-262)||(38337478-38337528)
chr3 (220-268)||(36750050-36750098)
chr3 (215-267)||(38923661-38923713)
[»] scaffold0129 (1 HSPs)
scaffold0129 (229-263)||(43218-43252)
[»] scaffold0311 (1 HSPs)
scaffold0311 (214-267)||(156-209)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-129; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 396 - 649
Target Start/End: Complemental strand, 24126586 - 24126332
Alignment:
Q  396 aaactttgcattccagatctaaatttttgcaatacaatttcagtccaacccaagatttaaccattcctcaattttaaa-ttgaataaatagtcaatgtta 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  24126586 aaactttgcattccagatctaaatttttgcaatacaatttcagtccagcccatgatttaaccattcctcaattttaatgttgaataaatagtcaatgtta 24126487  T
Q  495 aaataggctgtattttcatctctcccaccaaaggacttatttatatatgatttcaacattggccgttaaacttttatccaattattccttaattagtcta 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24126486 aaataggctgtattttcatctctcccaccaaaggacttatttatatatgatttcaacattggccgttaaacttttatccaattattccttaattagtcta 24126387  T
Q  595 catggtcaatgtcaagttggattgtgataaaataagtaggttgtattttcatctc 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24126386 catggtcaatgtcaagttggattgtgataaaataagtaggttgtattttcatctc 24126332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 215 - 330
Target Start/End: Complemental strand, 24126766 - 24126651
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactctt 314  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgatcttaacttttggattaaatgaagaacatggtattattatggactctt 24126667  T
Q  315 aacactagatattttt 330  Q
    ||||||||||||||||    
T  24126666 aacactagatattttt 24126651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 24125972 - 24126021
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 24126021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 7193336 - 7193391
Alignment:
Q  213 caggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  7193336 caggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 7193391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 3543111 - 3543058
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatc 3543058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 4311175 - 4311122
Alignment:
Q  276 ttggattaattgaagaacatggtattattatggactcttaacactagatatttt 329  Q
    |||||| || ||||||||| |||| ||| |||||||||||||| ||||||||||    
T  4311175 ttggatcaaatgaagaacacggtactatcatggactcttaacattagatatttt 4311122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 33018167 - 33018220
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||||||| | ||||||||||    
T  33018167 ggtgccatttaatttgggaaaggagagttctttcccatcattggaaagttgatc 33018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 33480676 - 33480623
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 33480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 3542819 - 3542867
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatc 3542867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 22582522 - 22582474
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 22582474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 22587353 - 22587305
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 22587305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 29998224 - 29998176
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaag 262  Q
    ||||||||||||||||||||||||  |||| ||| ||||||||| ||||    
T  29998224 aggtggcatttaatttggaaaaggttagtttttttccatcatgggaaag 29998176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 33479701 - 33479749
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  33479701 catttaatttgggaaaggagagttatttcccaccatgggaaagttgatc 33479749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 396 - 649
Target Start/End: Original strand, 47377032 - 47377286
Alignment:
Q  396 aaactttgcattccagatctaaatttttgcaatacaatttcagtccaacccaagatttaaccattcctcaattttaaa-ttgaataaatagtcaatgtta 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  47377032 aaactttgcattccagatctaaatttttgcaatacaatttcagtccagcccatgatttaaccattcctcaattttaatgttgaataaatagtcaatgtta 47377131  T
Q  495 aaataggctgtattttcatctctcccaccaaaggacttatttatatatgatttcaacattggccgttaaacttttatccaattattccttaattagtcta 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47377132 aaataggctgtattttcatctctcccaccaaaggacttatttatatatgatttcaacattggccgttaaacttttatccaattattccttaattagtcta 47377231  T
Q  595 catggtcaatgtcaagttggattgtgataaaataagtaggttgtattttcatctc 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47377232 catggtcaatgtcaagttggattgtgataaaataagtaggttgtattttcatctc 47377286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 47376852 - 47376967
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactctt 314  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgatcttaacttttggattaaatgaagaacatggtattattatggactctt 47376951  T
Q  315 aacactagatattttt 330  Q
    ||||||||||||||||    
T  47376952 aacactagatattttt 47376967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 38694702 - 38694755
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  38694702 ggtgccatttaatttggaaaaggagagttctttcccagcatggaaaagttgatc 38694755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 9939421 - 9939366
Alignment:
Q  213 caggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||| |||||||||||  ||||||||||| ||||||| ||||||||||||||||    
T  9939421 caggtgccatttaatttgagaaaggggagttctttcccaccatggaaaagttgatc 9939366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 47377647 - 47377597
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||| ||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 47377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 26611333 - 26611278
Alignment:
Q  213 caggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  26611333 caggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagttgatc 26611278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 11417686 - 11417740
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 11417740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 21166424 - 21166370
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||  ||||| ||||| ||||||||||||| ||||||||||    
T  21166424 aggtgccatttaatttgagaaaggagagttctttcccatcatgggaaagttgatc 21166370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 29651381 - 29651327
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 29651327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 11417985 - 11417932
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 11417932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 36865765 - 36865712
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 36865712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 45236008 - 45235959
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    |||| |||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagtt 45235959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 45330565 - 45330614
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    ||||| ||||||  ||| ||||||||||||||||||| ||||||||||||    
T  45330565 ggtggaatttaaaatgggaaaggggagttgtttcccaccatggaaaagtt 45330614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 496
Target Start/End: Complemental strand, 41883543 - 41883445
Alignment:
Q  399 ctttgcattccagatctaaatttttgcaatacaatttcagtccaacccaagatttaaccattcctcaattttaa-attgaataaatagtcaatgttaaa 496  Q
    |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||| |||||| |||||||||||  ||||||||||| |||||||||||    
T  41883543 ctttgcattcaagatccaaatatttgcaatacaatttcagtcaaatccaagatttgaccatttctcaattttaatgttgaataaataatcaatgttaaa 41883445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 41882190 - 41882284
Alignment:
Q  237 gggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactctt-aacactagatattttt 330  Q
    |||||| |||||||| ||| | |||||||||  ||||| |||||| || |||||||||||||||||| |||||||||| ||||||||||||||||    
T  41882190 gggagtagtttcccaccataggaaagttgattctgactattggatcaaatgaagaacatggtattatcatggactcttaaacactagatattttt 41882284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 41884263 - 41884162
Alignment:
Q  229 tggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactcttaacactagatattt 328  Q
    |||||||||| | |||||||||| ||| | |||||||||  | ||| || ||| || ||||||||||| |||||| ||||||||||||||||||| ||||    
T  41884263 tggaaaagggaaattgtttcccaccataggaaagttgattctaactattagatcaaatgaagaacatgatattatcatggactcttaacactagaaattt 41884164  T
Q  329 tt 330  Q
    ||    
T  41884163 tt 41884162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 51974436 - 51974517
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacat 295  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| |||||||||| || || || |||||| ||||||||||    
T  51974436 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtctattagattaaatgaagaacat 51974517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 43738028 - 43737973
Alignment:
Q  213 caggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  43738028 caggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatc 43737973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 48972494 - 48972440
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||||||||||||||    
T  48972494 aggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatc 48972440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 16270207 - 16270260
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 16270260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 23440913 - 23440860
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 23440860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 41882913 - 41882957
Alignment:
Q  399 ctttgcattccagatctaaatttttgcaatacaatttcagtccaa 443  Q
    |||||||||||| ||| |||| |||||| ||||||||||||||||    
T  41882913 ctttgcattccatatccaaatatttgcattacaatttcagtccaa 41882957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 42915829 - 42915743
Alignment:
Q  244 gtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactcttaacactagatattttt 330  Q
    |||||||| ||| | ||||||||| |||||| ||  ||||| | |||||||||||||||| || |||||||||||||||||||||||    
T  42915829 gtttcccaccataggaaagttgattttgactattaaattaaataaagaacatggtattatcatagactcttaacactagatattttt 42915743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 41859308 - 41859390
Alignment:
Q  213 caggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacat 295  Q
    |||||| |||||||||||| ||||| ||||| ||||||| ||||| |||||||||| || |  || |||||| ||||||||||    
T  41859308 caggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccgttagattaaatgaagaacat 41859390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 43924490 - 43924537
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaag 262  Q
    ||||||||||||||||| |||||| |||||||||||| ||||| ||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaag 43924537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 5034893 - 5034951
Alignment:
Q  210 tgacaggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||||||| |||||||||||| ||||| ||||| ||| ||| ||||| ||||||||||    
T  5034893 tgacaggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatc 5034951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 12349967 - 12350013
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaa 261  Q
    |||||| |||||||||| |||||| |||||||||||| |||||||||    
T  12349967 ggtggcgtttaatttgggaaagggaagttgtttcccaccatggaaaa 12350013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 34992313 - 34992259
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatc 34992259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 38023624 - 38023677
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| || || ||| ||||||||||||||||||||    
T  38023624 ggtgtcatttaatttgggaaaggagaattcttttccatcatggaaaagttgatc 38023677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 4059046 - 4058949
Alignment:
Q  233 aaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactcttaacactagatattttt 330  Q
    |||||||| | |||||||| ||| | ||||||||| |||||| || ||| || || ||||||||||||||| || |||| ||||||||||||||||||    
T  4059046 aaaggggactagtttcccaccataggaaagttgattttgactattagatcaaatggagaacatggtattatcatagactgttaacactagatattttt 4058949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 37547997 - 37548051
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  37547997 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatc 37548051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 44155024 - 44154978
Alignment:
Q  221 atttaatttggaaaaggggagttgtttcccatcatggaaaagttgat 267  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  44155024 atttaatttgggaaagggaagttgtttcccatgatggaaaagttgat 44154978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 21471016 - 21471097
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacat 295  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| |||||||||| || |  || |||||| ||||||||||    
T  21471016 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaagaacat 21471097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 30545487 - 30545434
Alignment:
Q  211 gacaggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    |||||||| |||||||||||| |||||| ||||||||||||| |||| ||||||    
T  30545487 gacaggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaagtt 30545434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 37546612 - 37546563
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    ||||||||||||  ||| ||||||||||||||||||||||||| ||||||    
T  37546612 ggtggcatttaaaatgggaaaggggagttgtttcccatcatgggaaagtt 37546563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 41043377 - 41043329
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaag 262  Q
    |||||||||||||||||| |||||  |||| ||||||||||||||||||    
T  41043377 aggtggcatttaatttgggaaaggctagttttttcccatcatggaaaag 41043329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 14573261 - 14573314
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatc 14573314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 21472002 - 21471949
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 21471949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 30544727 - 30544779
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgat 267  Q
    |||| |||||||||||| ||| || ||||||||||||| |||| |||||||||    
T  30544727 ggtgccatttaatttgggaaatggaagttgtttcccatgatgggaaagttgat 30544779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 26246412 - 26246310
Alignment:
Q  229 tggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactcttaacactagatattt 328  Q
    |||||||||||| | |||||||| ||| | ||||||||| ||| || ||  || || || ||||||||||||||| || |||| |||||| |||||||||    
T  26246412 tggaaaaggggactagtttcccaccataggaaagttgattttggctattatatcaaatggagaacatggtattatcatagactgttaacaatagatattt 26246313  T
Q  329 ttt 331  Q
    |||    
T  26246312 ttt 26246310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 668179 - 668259
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgacttttggattaattgaagaacat 295  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| |||||||||| || |  || |||||| ||||||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaagaacat 668259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 37468908 - 37468963
Alignment:
Q  213 caggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  37468908 caggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 37468963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 38071897 - 38071951
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||| | ||||| ||||| ||||||||||||| ||||||||||    
T  38071897 aggtgccatttaatttaggaaaggagagttctttcccatcatgggaaagttgatc 38071951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 38778853 - 38778907
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  38778853 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 38778907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 46759310 - 46759252
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatcttgac 273  Q
    ||||||||||| | ||| ||||||||||||||||||||||| | |||| | ||||||||    
T  46759310 ggtggcatttagtatgggaaaggggagttgtttcccatcatagcaaagctaatcttgac 46759252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 17145622 - 17145675
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 17145675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 27599211 - 27599260
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||| ||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 27599260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 27600143 - 27600094
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagtt 264  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||| ||||||    
T  27600143 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 27600094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 37469053 - 37469000
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 37469000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 38779611 - 38779558
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 38779558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 7677852 - 7677804
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 7677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 46756270 - 46756318
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagt 263  Q
    |||||| |||||||||| |||||| |||||||| ||| |||||||||||    
T  46756270 ggtggcgtttaatttgggaaagggaagttgttttccaccatggaaaagt 46756318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 27221 - 27274
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatc 27274  T

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Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 27623 - 27570
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||||||||| ||||| ||||||| ||||| ||||||||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagttgatc 27570  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 33001937 - 33001985
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||||||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatc 33001985  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 33685775 - 33685859
Alignment:
Q  245 tttcccatcatggaaaagttgatcttgacttttggattaattgaagaacatggtattattatggactcttaacactagatatttt 329  Q
    ||||||| |||| ||||||||||  || |  || |||||| ||||||| || ||||||| ||||||||||||||| |||||||||    
T  33685775 tttcccaccatgtaaaagttgattatgtccattagattaaatgaagaatatagtattatcatggactcttaacacaagatatttt 33685859  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 8204119 - 8204173
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  8204119 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 8204173  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 33002865 - 33002811
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 33002811  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 15184065 - 15184012
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 15184012  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 32490238 - 32490190
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||||||||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatc 32490190  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 36750486 - 36750432
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||||    
T  36750486 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatc 36750432  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 38337528 - 38337478
Alignment:
Q  212 acaggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaag 262  Q
    ||||||||| |||||||||| |||||| |||||||||||| ||||| ||||    
T  38337528 acaggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaag 38337478  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 36750050 - 36750098
Alignment:
Q  220 catttaatttggaaaaggggagttgtttcccatcatggaaaagttgatc 268  Q
    |||||||||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  36750050 catttaatttgggaaaggagagttcttttccaccatggaaaagttgatc 36750098  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 38923713 - 38923661
Alignment:
Q  215 ggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgat 267  Q
    |||| |||||||||||| ||| | ||||| ||||||| |||||||||||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagttgat 38923661  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 43252 - 43218
Alignment:
Q  229 tggaaaaggggagttgtttcccatcatggaaaagt 263  Q
    ||||||||||||||||||||||||||||| |||||    
T  43252 tggaaaaggggagttgtttcccatcatgggaaagt 43218  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 209 - 156
Alignment:
Q  214 aggtggcatttaatttggaaaaggggagttgtttcccatcatggaaaagttgat 267  Q
    ||||| |||||||||||| ||||| ||||| ||||||| ||||| |||||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgat 156  T

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