View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8850_low_10 (Length: 254)
Name: NF8850_low_10
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4684314 - 4684553
Alignment:
| Q |
1 |
accaacacaaatatggacaatgctaggccttataccaaaatgtaactacttgtaagtcacagcatgcttaccagtcattatagcatctcatacacaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684314 |
accaacacaaatatggacaatgctaggccttataccaaaatgtaactacttgtaagtcacagcatgcttaccagtcattatagcatctcatacacaaaga |
4684413 |
T |
|
| Q |
101 |
gtggtagcaattgggtaacacaaccttgttgttcatttccatacaaatcgggcattcttcttctctctctaaatcaatttcagatagctttccttttcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684414 |
gtggtagcaattgggtaacacaaccttgttgttcatttccatacaaatcggacattcttcttctctctctaaatcaatttcagatagctttccttttcca |
4684513 |
T |
|
| Q |
201 |
atcacatctttaggcttgtattttgtagcacacaaatcct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684514 |
atcacatctttaggcttgtattttgtagcacacaaatcct |
4684553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University