View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8850_low_15 (Length: 209)
Name: NF8850_low_15
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 1900624 - 1900802
Alignment:
| Q |
14 |
agagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttccttttt |
113 |
Q |
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| T |
1900624 |
agagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttccttttt |
1900723 |
T |
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| Q |
114 |
cgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatg |
192 |
Q |
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| T |
1900724 |
cgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatg |
1900802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 1910070 - 1910248
Alignment:
| Q |
14 |
agagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttccttttt |
113 |
Q |
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| T |
1910070 |
agagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttccttttt |
1910169 |
T |
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| Q |
114 |
cgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatg |
192 |
Q |
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| T |
1910170 |
cgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatg |
1910248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 1893770 - 1893899
Alignment:
| Q |
62 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
161 |
Q |
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| T |
1893770 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1893869 |
T |
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| Q |
162 |
attaggttctgggttcctaacaggatatat |
191 |
Q |
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| T |
1893870 |
gttaggttctgggtccctgacaggctatat |
1893899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 1903216 - 1903345
Alignment:
| Q |
62 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
161 |
Q |
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||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
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| T |
1903216 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1903315 |
T |
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| Q |
162 |
attaggttctgggttcctaacaggatatat |
191 |
Q |
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| T |
1903316 |
gttaggttctgggtccctgacaggctatat |
1903345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 2934605 - 2934487
Alignment:
| Q |
60 |
gaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttat |
159 |
Q |
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||||||||| ||||| || |||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| | |
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| T |
2934605 |
gaggagctttcctctgggcagtaggagtaccgttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttct |
2934513 |
T |
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| Q |
160 |
ccattaggttctgggttcctaacagg |
185 |
Q |
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|| ||||||||| ||| ||||||||| |
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| T |
2934512 |
ccgttaggttctaggtccctaacagg |
2934487 |
T |
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