View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8850_low_3 (Length: 541)
Name: NF8850_low_3
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Original strand, 2466672 - 2467182
Alignment:
| Q |
16 |
cttttctcactcccaaaataaggatgtataagtataacccctttaatcttcacaggacaaaacccatcattttgaatagctttaacagcaacataatgag |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466672 |
cttttctcactcccaaaataaggatgtataagcataacccctttaatcttcacaggacaaaacccatcattttgaatagctttaacagcaacataatgag |
2466771 |
T |
|
| Q |
116 |
aaatgttaccaccagcactatcaccagagagaaaaacatttgataaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466772 |
aaatgttaccaccagcactatcaccagagagaaaaacatttgataaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaag |
2466871 |
T |
|
| Q |
216 |
tgatgagtaacaatcttcataagctattggaagacgatgctccggtgctaaccggtaatcaacagagagaataatggactgtgacgcgacggagaaatct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466872 |
tgatgagtaacaatcttcataagctattggaagacgattctccggtgctaaccggtaatcaacagagagaataatggactgtgacgcgacggagaaatct |
2466971 |
T |
|
| Q |
316 |
ccgaggaagttgttgtaaccaagccatgttgtggaaccaatgcaaaagccaccaccatggaaataaactaagagaggtaggagttttttggttggattgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466972 |
ccgaggaagttgttgtaaccaagccatgttgtggaaccaatgcaaaagccaccaccatggaaataaactaagagaggtaggagttttttggttggattgt |
2467071 |
T |
|
| Q |
416 |
ttggaatgaagattcttcctgtgatgggttttgtagggtcaatgattacgtctttggatttgtatttgttggatgaatctaatgagggtggtgctatttc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467072 |
ttggaatgaagattcttcctgtgatgggttttgtagggtcaatgattatgtctttggatttgtatttgttggatgaatctaatgagggtggtgctatttc |
2467171 |
T |
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| Q |
516 |
tgggttgaaac |
526 |
Q |
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||||||||||| |
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| T |
2467172 |
tgggttgaaac |
2467182 |
T |
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