View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8850_low_4 (Length: 484)
Name: NF8850_low_4
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 41758079 - 41758538
Alignment:
| Q |
17 |
aaaaagatcaaaaggacataccatcatgctttttctgcatagttttaattgtagagaggaaagcattgtagaggtctagtgtcacataaactgattttcc |
116 |
Q |
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| T |
41758079 |
aaaaagatcaaaaggacataccatcatgctttttctgcatagttttaattgtagagaggaaagcattgtagaggtctagtgtcacataaactgattttcc |
41758178 |
T |
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| Q |
117 |
aacttgttgttggttaagttgtagcacagtttggagtagtaatttgttgtgattttctgagaccaaattcaaaaggtcaacgcaactaagatggaaagtt |
216 |
Q |
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| T |
41758179 |
aacttgttgttggttaagttgtagcacagtttggagtagtaatttgttgtgatcttctgagaccaaattcaaaaggtcaacgcaactaagatggaaagtt |
41758278 |
T |
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| Q |
217 |
accaaagttatctcaggtaaacacccaattggttccaataatccaattgctactttatttattcccaaattgtggatgcgttgaacatttatggatagtt |
316 |
Q |
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| T |
41758279 |
accaaagttatctcaggtaaacatccaattggttccaataatccaattgctactttatttattcccaaattgtggatgcgttgaacatttatggatagtt |
41758378 |
T |
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| Q |
317 |
gattgataaggcttgtagtgaaggattttatttcctaccaaatgaaatacnnnnnnnccaacatattagtagaaaaaattgagatatcagcaagaacatt |
416 |
Q |
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| T |
41758379 |
gattgataaggcttgtagtgaaggattttatttcctaccaaatgaaatacaaaaaaacaaacatattagtagaaaaaattgagatatcagcaagaacatt |
41758478 |
T |
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| Q |
417 |
gaaaccnnnnnnnccacttaccgtaatgcttctattgtttactaaaaaagcagtataatc |
476 |
Q |
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| T |
41758479 |
gaaaccaaaaaaaccacttaccgtaatgcttctattgtttactaaaaaagcagtgtaatc |
41758538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 24 - 358
Target Start/End: Original strand, 41753834 - 41754165
Alignment:
| Q |
24 |
tcaaaaggacataccatcatgctttttctgcatagttttaattgtagagaggaaagcattgtagaggtctagtgtcacataaactgattttccaacttgt |
123 |
Q |
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||||||| || ||||||| |||||||||||| |||||||||| ||||||||||||| || |||||||||| |||||| ||||| | ||||||||| ||| |
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| T |
41753834 |
tcaaaagaacgtaccatcgcgctttttctgcaaagttttaattatagagaggaaagcgttatagaggtctaatgtcacgtaaaccggttttccaacctgt |
41753933 |
T |
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| Q |
124 |
tgttggttaagttgtagcacagtttggagtagtaatttgttgtgattttctgagaccaaattcaaaaggtcaacgcaactaagatggaaagttaccaaag |
223 |
Q |
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| T |
41753934 |
t---ggttaagttgtagtacagtttggagtagtaatttgttgtgattttctgagaccaaattcaaaaggtcgacgcaactaagatgaaaagttacagcgt |
41754030 |
T |
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| Q |
224 |
ttatctcaggtaaacacccaattggttccaataatccaattgctactttatttattcccaaattgtggatgcgttgaacatttatggatagttgattgat |
323 |
Q |
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| T |
41754031 |
ttatccgaggtaaacacccgagtggttccaataacgcaattgctactttatttattcctaaattgtggatgcgttgaacatttatggatagttgattgat |
41754130 |
T |
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| Q |
324 |
aaggcttgtagtgaaggattttatttcctaccaaa |
358 |
Q |
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|||| ||||||||||||||||||| |||||||||| |
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| T |
41754131 |
aagggttgtagtgaaggattttatctcctaccaaa |
41754165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 41739417 - 41739466
Alignment:
| Q |
235 |
aaacacccaattggttccaataatccaattgctactttatttattcccaa |
284 |
Q |
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|||||||| || ||||| |||||||||||||||| ||||||||||||||| |
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| T |
41739417 |
aaacaccctataggttctaataatccaattgctattttatttattcccaa |
41739466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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