View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8850_low_5 (Length: 419)
Name: NF8850_low_5
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8850_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 1523287 - 1522904
Alignment:
| Q |
5 |
atcaatattttcttttaaagtaaaaaagtagtcaaatggaagaacaacccactaacgactacttacaacagtcccaagagggatttgagaaacgactcgc |
104 |
Q |
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| T |
1523287 |
atcaatattttcttttaaagtaaaaaagtagttagatggaagaacaacccactaacgactacttacaacagccccaagagggttttgagaaacgactcac |
1523188 |
T |
|
| Q |
105 |
aacgaacctagatccctttcatcgtgaagaccaccagaaacaactagtcgcaacaacacatcaactacatatataatctagtatgagtatgaacaaaact |
204 |
Q |
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| T |
1523187 |
aacgaacctagatccctttcatcgtgaaggccaccagaaacaactagtcgcaacaacacatcaactacatatataatctagtatgagcatgaacaaaact |
1523088 |
T |
|
| Q |
205 |
atggaacaaacaacgaatacagtggcaacgtcgacttcatggactactccgactagggtgaaacagtgttgtagtcgtgagcctagagagtgcaccacta |
304 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1523087 |
atggaacaaacaatgaatacagcagcaacgtcgacttcatggacaacttcgactagggtgaaacagtgttgtagtcgtgagcctagagagtgcaccacta |
1522988 |
T |
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| Q |
305 |
gctggaaaaggctacatcattacttaaaattatttttaatcttttaagtttaatttgcgaaaactttgtaagtttgctgaaact |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
1522987 |
gctggaaaaggctacatcattacttaaaattatttttaatcttttaagtttaatttgctaaaactttttaagtttgctaaaact |
1522904 |
T |
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