View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8850_low_6 (Length: 393)

Name: NF8850_low_6
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8850_low_6
NF8850_low_6
[»] chr3 (5 HSPs)
chr3 (1-379)||(35380691-35381081)
chr3 (260-379)||(35374708-35374827)
chr3 (1-58)||(35374437-35374494)
chr3 (308-379)||(35351663-35351734)
chr3 (308-379)||(35356797-35356868)
[»] chr7 (1 HSPs)
chr7 (309-379)||(10696703-10696773)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 35380691 - 35381081
Alignment:
Q  1 ccctcccatgacgaccatagctccaactcagccgcacatggaacagtatcaccatcacgcctcatctccttcattaattatgaatccttttannnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  35380691 ccctcccatgacgaccatagctccaactcagccgcacatggaacagtatcaccatcacgcctcatctccttcattaattatgaatccttttatttttttt 35380790  T
Q  101 cccatgctcttcgtaggggtggttctg------------atgaaaatcctcttcttaagcatcaaatattggtgtacaactcgccatggaacaatggtgg 188  Q
    |||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380791 cccatgctcttcgtaggggtggttctggtgaagatcctgatgaaaatcctcttcttaagcatcaaatattggtgtacaactcgccatggaacaatggtgg 35380890  T
Q  189 aggccaggcgcacgcatgtcattcacaacttagacgagtccgttataaacaccgccgtcatcttctcctccgtctacaacgctaaatatgcacaagaaga 288  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35380891 aggccaggcgcacgcacgtcattcacaacttagacgagtccgttataaacaccgccgtcatcctctcctccgtctacaacgctaaatatgcacaagaaga 35380990  T
Q  289 atttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35380991 atttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccagagtttccatctc 35381081  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 35374708 - 35374827
Alignment:
Q  260 gtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctcttt 359  Q
    |||||||  ||||| |||||| | ||||||| || |||||||||||||||||||||| |||| |||||||||||| ||  |||||| || ||||||||||    
T  35374708 gtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacactccctcttt 35374807  T
Q  360 gttcccacagtttccatctc 379  Q
    |||||||||| |||||||||    
T  35374808 gttcccacagcttccatctc 35374827  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35374437 - 35374494
Alignment:
Q  1 ccctcccatgacgaccatagctccaactcagccgcacatggaacagtatcaccatcac 58  Q
    |||||||||||| |||| |||||||||||||||||||||| | || ||||||||||||    
T  35374437 ccctcccatgacaaccacagctccaactcagccgcacatgcatcactatcaccatcac 35374494  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 35351663 - 35351734
Alignment:
Q  308 atttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 379  Q
    |||||||||  |||||||||| ||||||||  |||| | || ||||||||||||||||||| ||||||||||    
T  35351663 atttgcttggttgaatttgaaaacaatgattacattcgcaccctccctctttgttcccacattttccatctc 35351734  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 35356797 - 35356868
Alignment:
Q  308 atttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 379  Q
    |||||||||  |||||||||| ||||||||  |||| | || ||||||||||||||||||| ||||||||||    
T  35356797 atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccacactttccatctc 35356868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 10696703 - 10696773
Alignment:
Q  309 tttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 379  Q
    |||| ||| |||||||| |||||||||||  |||| | || || |||||||||||||||| ||||||||||    
T  10696703 tttgtttggatgaatttaaagacaatgatcgcattcgcaccctgcctctttgttcccacactttccatctc 10696773  T

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