View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8850_low_9 (Length: 259)

Name: NF8850_low_9
Description: NF8850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8850_low_9
NF8850_low_9
[»] chr3 (12 HSPs)
chr3 (147-243)||(23358846-23358941)
chr3 (147-243)||(23363667-23363762)
chr3 (147-243)||(23694145-23694240)
chr3 (147-243)||(23712585-23712680)
chr3 (147-243)||(23731041-23731136)
chr3 (147-243)||(23749496-23749591)
chr3 (1-97)||(23358954-23359050)
chr3 (1-97)||(23363775-23363871)
chr3 (1-97)||(23694253-23694349)
chr3 (1-97)||(23712693-23712789)
chr3 (1-97)||(23731149-23731245)
chr3 (1-97)||(23749604-23749700)
[»] chr5 (1 HSPs)
chr5 (172-235)||(11450054-11450118)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 23358941 - 23358846
Alignment:
Q  147 tgaaaaaatgaccgctcactaacaaaactaacttgctgcgcaagtaacaactcactaacaaactaattgcataagccatagcttatcctatgtcaat 243  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23358941 tgaaaaaatgaccgctcactaacaaa-ctaacttgctgcacaagtaacaactcactaacaaactaattgcataagccatagcttatcctttgtcaat 23358846  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 23363762 - 23363667
Alignment:
Q  147 tgaaaaaatgaccgctcactaacaaaactaacttgctgcgcaagtaacaactcactaacaaactaattgcataagccatagcttatcctatgtcaat 243  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23363762 tgaaaaaatgaccgctcactaacaaa-ctaacttgctgcacaagtaacaactcactaacaaactaattgcataagccatagcttatcctttgtcaat 23363667  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 23694240 - 23694145
Alignment:
Q  147 tgaaaaaatgaccgctcactaacaaaactaacttgctgcgcaagtaacaactcactaacaaactaattgcataagccatagcttatcctatgtcaat 243  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23694240 tgaaaaaatgaccgctcactaacaaa-ctaacttgctgcacaagtaacaactcactaacaaactaattgcataagccatagcttatcctttgtcaat 23694145  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 23712680 - 23712585
Alignment:
Q  147 tgaaaaaatgaccgctcactaacaaaactaacttgctgcgcaagtaacaactcactaacaaactaattgcataagccatagcttatcctatgtcaat 243  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23712680 tgaaaaaatgaccgctcactaacaaa-ctaacttgctgcacaagtaacaactcactaacaaactaattgcataagccatagcttatcctttgtcaat 23712585  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 23731136 - 23731041
Alignment:
Q  147 tgaaaaaatgaccgctcactaacaaaactaacttgctgcgcaagtaacaactcactaacaaactaattgcataagccatagcttatcctatgtcaat 243  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23731136 tgaaaaaatgaccgctcactaacaaa-ctaacttgctgcacaagtaacaactcactaacaaactaattgcataagccatagcttatcctttgtcaat 23731041  T

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Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 23749591 - 23749496
Alignment:
Q  147 tgaaaaaatgaccgctcactaacaaaactaacttgctgcgcaagtaacaactcactaacaaactaattgcataagccatagcttatcctatgtcaat 243  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23749591 tgaaaaaatgaccgctcactaacaaa-ctaacttgctgcacaagtaacaactcactaacaaactaattgcataagccatagcttatcctttgtcaat 23749496  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23359050 - 23358954
Alignment:
Q  1 tttaaaggaattcatttatgccacagatttttaccaggaagttgcaaccctacattgcagtcttccgttaagacattacatgcagatttaacggaat 97  Q
    ||||| ||||| ||||||||||||||||||| ||| ||||| |||| ||| ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  23359050 tttaacggaatacatttatgccacagattttaaccgggaagctgcacccccacattgctgacttccattaagacattatatgcagatttaatggaat 23358954  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23363871 - 23363775
Alignment:
Q  1 tttaaaggaattcatttatgccacagatttttaccaggaagttgcaaccctacattgcagtcttccgttaagacattacatgcagatttaacggaat 97  Q
    ||||| ||||| ||||||||||||||||||| ||| ||||| |||| ||| ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  23363871 tttaacggaatacatttatgccacagattttaaccgggaagctgcacccccacattgctgacttccattaagacattatatgcagatttaatggaat 23363775  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23694349 - 23694253
Alignment:
Q  1 tttaaaggaattcatttatgccacagatttttaccaggaagttgcaaccctacattgcagtcttccgttaagacattacatgcagatttaacggaat 97  Q
    ||||| ||||| ||||||||||||||||||| ||| ||||| |||| ||| ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  23694349 tttaacggaatacatttatgccacagattttaaccgggaagctgcacccccacattgcggacttccattaagacattatatgcagatttaatggaat 23694253  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23712789 - 23712693
Alignment:
Q  1 tttaaaggaattcatttatgccacagatttttaccaggaagttgcaaccctacattgcagtcttccgttaagacattacatgcagatttaacggaat 97  Q
    ||||| ||||| ||||||||||||||||||| ||| ||||| |||| ||| ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  23712789 tttaacggaatacatttatgccacagattttaaccgggaagctgcacccccacattgcggacttccattaagacattatatgcagatttaatggaat 23712693  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23731245 - 23731149
Alignment:
Q  1 tttaaaggaattcatttatgccacagatttttaccaggaagttgcaaccctacattgcagtcttccgttaagacattacatgcagatttaacggaat 97  Q
    ||||| ||||| ||||||||||||||||||| ||| ||||| |||| ||| ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  23731245 tttaacggaatacatttatgccacagattttaaccgggaagctgcacccccacattgcggacttccattaagacattatatgcagatttaatggaat 23731149  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23749700 - 23749604
Alignment:
Q  1 tttaaaggaattcatttatgccacagatttttaccaggaagttgcaaccctacattgcagtcttccgttaagacattacatgcagatttaacggaat 97  Q
    ||||| ||||| ||||||||||||||||||| ||| ||||| |||| ||| ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  23749700 tttaacggaatacatttatgccacagattttaaccgggaagctgcacccccacattgcggacttccattaagacattatatgcagatttaatggaat 23749604  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 11450118 - 11450054
Alignment:
Q  172 aactaacttgctgcgcaagtaacaactcactaac-aaactaattgcataagccatagcttatcct 235  Q
    |||||||||||||||||||||||| ||||||||| |||| || ||||||| ||||||||||||||    
T  11450118 aactaacttgctgcgcaagtaacagctcactaacaaaacaaaatgcataaaccatagcttatcct 11450054  T

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