View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_high_2 (Length: 520)
Name: NF8851_high_2
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 161 - 515
Target Start/End: Complemental strand, 4532321 - 4531967
Alignment:
| Q |
161 |
aagcttttgccttcttctccatcatatgtgacctctttcttcgggcgaacgagggttgtatgcaaatgcgtgctatggcgctcaagtcagtgagtggcat |
260 |
Q |
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| T |
4532321 |
aagcttttgccttcttctccatcatatgtgacctctttcttcgggcgaacgagggttgtatgcaaatgcgtgctatggcgctcaagtcagtgagtgacat |
4532222 |
T |
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| Q |
261 |
aagatgatacactatttgcacagagtgaatgtatctgacccatgtatatgagccaataatggaggtttgaggatttggtcgttgtacctttgcatggaca |
360 |
Q |
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| T |
4532221 |
aagatgatacactatttgtatagagtgaatgtatctgacccatgtatatgagccaataatggaggtttgaggatttggtccttgtacctttgcatgaaca |
4532122 |
T |
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| Q |
361 |
actgttcttggaggacaatcatagtcctttgagaggcagctgtgggtgtctggtctgtggtagattggtggcacaaaccctgctagttgttcaaatttgg |
460 |
Q |
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| T |
4532121 |
actgttcttgaaggacaatcatagtcctttgagaggcagttgtgggtgtctggtctgtggtagattggtggcacaaaccttgctagttgttcaaattcgg |
4532022 |
T |
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| Q |
461 |
tttcacgcgcctttgtgccacaaattggttgttcaccttcaatatctctgcttct |
515 |
Q |
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| T |
4532021 |
tttcacgcgcctttgtgccacaaattggttgttcaccttcaatatgtgtgcttct |
4531967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 49191551 - 49191626
Alignment:
| Q |
320 |
tggaggtttgaggatttggtcgttgtacctttgcatggacaactgttcttggaggacaatcatagtcctttgagag |
395 |
Q |
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| T |
49191551 |
tggaggtttaaggacttggtccttgtacctttacgtggacaattgttctagaaggacaatcatggtcctttgagag |
49191626 |
T |
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