View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_1 (Length: 548)
Name: NF8851_low_1
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 39 - 279
Target Start/End: Complemental strand, 52512657 - 52512413
Alignment:
| Q |
39 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
138 |
Q |
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| T |
52512657 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
52512558 |
T |
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| Q |
139 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatacgagtttcaattcaatttcaattac |
238 |
Q |
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| T |
52512557 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatatgagtttcaattcaatttcaattac |
52512458 |
T |
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| Q |
239 |
tcactca----ctcatcattaacttaattaattgcattcatatag |
279 |
Q |
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| T |
52512457 |
tcactcactcactcatcattaacttaattaattgcattcatatag |
52512413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 302 - 548
Target Start/End: Complemental strand, 52512387 - 52512120
Alignment:
| Q |
302 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
401 |
Q |
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| T |
52512387 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
52512288 |
T |
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| Q |
402 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcctcattcttttt-----------taataataatattcttcttcctt |
490 |
Q |
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| T |
52512287 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcttcattctttgttataataataataataataataatattcttcctt |
52512188 |
T |
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| Q |
491 |
attataatactact----------tttcatttaggtgatatgtgtggtggtacaggaaaatggaaagc |
548 |
Q |
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| T |
52512187 |
attataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagc |
52512120 |
T |
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