View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_10 (Length: 312)
Name: NF8851_low_10
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 3730696 - 3730849
Alignment:
| Q |
96 |
cattttcatgtttctacaagacaattaaaaatacaaaaagctagttttgttgaaagagtttaaaatgtc--tcttgatattgacaaacctgaatcatttc |
193 |
Q |
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| T |
3730696 |
cattttcatgtttctacaagacaattaaaaatacaaaaagctagttttgttgaaagagtttaaaatgtcgttcttgatattgacaaacctgaatcatttc |
3730795 |
T |
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| Q |
194 |
taacaattctgaatttttccaggggccttcatcactcatcaagcaacctccata |
247 |
Q |
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| T |
3730796 |
taacaattctgaatttttccaggggccttgatcactcatcaagcaacctccata |
3730849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 3730659 - 3730696
Alignment:
| Q |
19 |
gaatggctctaatttatgaaactctcaattatgtgcac |
56 |
Q |
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| T |
3730659 |
gaatggctctaatttatgaaactctcaattatgtgcac |
3730696 |
T |
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