View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8851_low_14 (Length: 259)

Name: NF8851_low_14
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8851_low_14
NF8851_low_14
[»] chr4 (34 HSPs)
chr4 (19-259)||(24477597-24477837)
chr4 (27-259)||(24421324-24421556)
chr4 (54-259)||(24470167-24470372)
chr4 (19-136)||(24421364-24421481)
chr4 (19-136)||(24470242-24470359)
chr4 (19-148)||(24421172-24421301)
chr4 (42-163)||(24470743-24470864)
chr4 (24-136)||(24477458-24477570)
chr4 (19-148)||(24470422-24470551)
chr4 (24-163)||(24420841-24420980)
chr4 (54-163)||(24420631-24420740)
chr4 (19-148)||(24470614-24470743)
chr4 (72-163)||(24420553-24420644)
chr4 (54-160)||(24421159-24421265)
chr4 (120-184)||(24482203-24482267)
chr4 (21-160)||(24420550-24420689)
chr4 (21-124)||(24470686-24470789)
chr4 (54-152)||(24421111-24421209)
chr4 (69-163)||(24421270-24421364)
chr4 (69-163)||(24470359-24470453)
chr4 (69-163)||(24470551-24470645)
chr4 (54-175)||(24471162-24471283)
chr4 (19-163)||(24420980-24421124)
chr4 (63-139)||(24481484-24481559)
chr4 (52-175)||(24420341-24420464)
chr4 (54-173)||(24420823-24420942)
chr4 (21-136)||(24420934-24421049)
chr4 (72-163)||(24470982-24471073)
chr4 (102-148)||(24477392-24477438)
chr4 (81-142)||(24481334-24481395)
chr4 (19-163)||(24421028-24421172)
chr4 (21-145)||(24470952-24471076)
chr4 (57-97)||(24481852-24481892)
chr4 (56-96)||(24482157-24482197)
[»] scaffold0879 (6 HSPs)
scaffold0879 (19-148)||(4473-4602)
scaffold0879 (19-145)||(4428-4554)
scaffold0879 (54-152)||(4565-4663)
scaffold0879 (19-163)||(4650-4794)
scaffold0879 (21-136)||(4725-4840)
scaffold0879 (19-163)||(4602-4746)
[»] chr2 (10 HSPs)
chr2 (60-145)||(41899950-41900035)
chr2 (24-163)||(41900298-41900437)
chr2 (21-163)||(41900103-41900245)
chr2 (21-126)||(41900151-41900256)
chr2 (21-118)||(41900535-41900632)
chr2 (69-136)||(41900295-41900362)
chr2 (63-121)||(41899857-41899915)
chr2 (55-145)||(41900089-41900179)
chr2 (21-126)||(41900343-41900448)
chr2 (101-145)||(41900279-41900323)
[»] chr1 (8 HSPs)
chr1 (54-145)||(11902065-11902156)
chr1 (60-145)||(11879469-11879554)
chr1 (80-121)||(11902377-11902418)
chr1 (52-121)||(11879445-11879514)
chr1 (54-139)||(11901906-11901991)
chr1 (93-121)||(11879685-11879713)
chr1 (57-121)||(52821035-52821099)
chr1 (93-145)||(52821119-52821171)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 24477597 - 24477837
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24477597 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggaggaggtggtgagggagatggtggtggaggaga 24477696  T
Q  119 cttatagacataaggtggtggtggtgatggggatcgtggaggtggaaatatgtagtaataaggtgggtatttgtggacatagggagttggaggtgataga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  24477697 cttatagacataaggtggtggtggtgatggggatcgtggaggtggatatatgtagtaataaggtgggtatttgcagacatagggaggtggaggtgataga 24477796  T
Q  219 gatagcggaggtgggaacttgtagtaatatggaggtgattt 259  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  24477797 gatggcggaggtgggaacttgtagtaatatggaggtgattt 24477837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 259
Target Start/End: Original strand, 24421324 - 24421556
Alignment:
Q  27 tagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttataga 126  Q
    ||||||| ||| || ||||| ||  |||||||||| ||||| |||||||| |||||||||| ||| || ||||||||||| ||||| || ||||| || |    
T  24421324 tagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtaca 24421423  T
Q  127 cataaggtggtggtggtgatggggatcgtggaggtggaaatatgtagtaataaggtgggtatttgtggacatagggagttggaggtgatagagatagcgg 226  Q
    |||| || || |||||||| || ||| ||||||||||| || ||||||||||||||||||||||||||||||| |||| ||| || ||| ||||  | ||    
T  24421424 catacggaggaggtggtgagggagatggtggaggtggagatttgtagtaataaggtgggtatttgtggacatatggaggtggtggcgatggagaaggtgg 24421523  T
Q  227 aggtgggaacttgtagtaatatggaggtgattt 259  Q
    ||||||| | |||||||||||||||||||||||    
T  24421524 aggtggggatttgtagtaatatggaggtgattt 24421556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 24470372 - 24470167
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatc 153  Q
    |||||||| ||||| |||||||| |||||||||| ||| || ||||||||||| ||||| || ||||| || ||||| || || |||||||| || |||     
T  24470372 gatggaggaggtggtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatg 24470273  T
Q  154 gtggaggtggaaatatgtagtaataaggtgggtatttgtggacatagggagttggaggtgatagagatagcggaggtgggaacttgtagtaatatggagg 253  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| |||| ||| || ||| ||||  | ||||||||| | |||||||||||||||||    
T  24470272 gtggaggtggagatttgtagtaataaggtgggtatttgtggacatatggaggtggtggcgatggagaaggtggaggtggggatttgtagtaatatggagg 24470173  T
Q  254 tgattt 259  Q
    ||||||    
T  24470172 tgattt 24470167  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 24421364 - 24421481
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || |||||    
T  24421364 gtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggaga 24421463  T
Q  119 cttatagacataaggtgg 136  Q
     || |||  |||||||||    
T  24421464 tttgtagtaataaggtgg 24421481  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 24470359 - 24470242
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || |||||    
T  24470359 gtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggaga 24470260  T
Q  119 cttatagacataaggtgg 136  Q
     || |||  |||||||||    
T  24470259 tttgtagtaataaggtgg 24470242  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 24421172 - 24421301
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| |||||| ||||| ||  | |||||||||||||| |||||||| ||||| || |  || |||||||| |||||||| ||||||||    
T  24421172 gtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacataaggtgggggaggtgagggtgatggtggaggaggaga 24421271  T
Q  119 cttatagacataaggtggtggtggtgatgg 148  Q
    ||| |||||||| || ||||||||||||||    
T  24421272 cttgtagacatatggaggtggtggtgatgg 24421301  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 24470864 - 24470743
Alignment:
Q  42 ggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtg 141  Q
    ||||||||| |||||||||| ||||| ||||| || |||||||| | ||| ||||| || |||||||| || ||||| || |||||||| ||||||||||    
T  24470864 ggaggagagggagatggaggaggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggtggtggtg 24470765  T
Q  142 gtgatggggatcgtggaggtgg 163  Q
    | ||||||||| ||||||||||    
T  24470764 gagatggggatggtggaggtgg 24470743  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 24477458 - 24477570
Alignment:
Q  24 ttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttat 123  Q
    |||||||||| ||| || ||||| ||  |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||||||| |||  |||||    
T  24477458 ttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatggaggtggaggtgagggagatggtggtggtggactcttat 24477557  T
Q  124 agacataaggtgg 136  Q
    ||||||| |||||    
T  24477558 agacatatggtgg 24477570  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 24470551 - 24470422
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| |||||| ||||| ||  | || ||||||||||| |||||||| ||||| || |  || |||||||| | |||||| ||||||||    
T  24470551 gtgacttgtagacatatggaggaggaggtgaaggggaaggaggtggtggtgacttgtaaacatagggcgggggaggtgagggtgttggtggaggaggaga 24470452  T
Q  119 cttatagacataaggtggtggtggtgatgg 148  Q
    ||| |||||||| || ||||||||||||||    
T  24470451 cttgtagacatatggaggtggtggtgatgg 24470422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 24420841 - 24420980
Alignment:
Q  24 ttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttat 123  Q
    ||||| |||| |||||| ||||| ||  | || ||||||||||| ||||| || |||||||| | ||| ||||| || |||||||| || ||||| || |    
T  24420841 ttgtaaacatatggaggaggaggggaaggggaaggaggtggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgt 24420940  T
Q  124 agacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||||||| || |||||||| ||||||||| ||||||||||    
T  24420941 agacatatggaggtggtggagatggggatggtggaggtgg 24420980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 24420631 - 24420740
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatc 153  Q
    ||||| |||||||| |||||||| | ||||||||  |||||||| ||||||||||| |||||||| ||||| || || || |||||||| ||||| ||      
T  24420631 gatggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacg 24420730  T
Q  154 gtggaggtgg 163  Q
    ||||||||||    
T  24420731 gtggaggtgg 24420740  T

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Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 24470743 - 24470614
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| |||||| ||||| ||  |||||||||||||||| ||||| || | ||| || |  || || || || |||||||| ||||||||    
T  24470743 gtgacttgtagacatatggaggaggaggtgaaggagatggaggtggtggcgacttataaatatagggtgggggaggagaaggtgatggtggaggaggaga 24470644  T
Q  119 cttatagacataaggtggtggtggtgatgg 148  Q
    ||| |||||||| || ||||||||||||||    
T  24470643 cttgtagacatatggaggtggtggtgatgg 24470614  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 24420553 - 24420644
Alignment:
Q  72 ttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||||| |||||||||| ||| ||||| ||||| || || ||||| |||||||||||||| || ||||||||||| |||||| |||| |||||    
T  24420553 ttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacatatggaggtggtggtgaaggggatggtggtggtgg 24420644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 24421159 - 24421265
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatc 153  Q
    ||||| |||||||| |||||||| |||||||||| ||| ||||| || ||||| ||||| || ||||| || ||||||||||| || ||||| || |||     
T  24421159 gatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacataaggtgggggaggtgagggtgatg 24421258  T
Q  154 gtggagg 160  Q
    |||||||    
T  24421259 gtggagg 24421265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 24482203 - 24482267
Alignment:
Q  120 ttatagacataaggtggtggtggtgatggggatcgtggaggtggaaatatgtagtaataaggtgg 184  Q
    |||||||||||||| |||||||||||||| ||| |||| |||||| || |||||||||| |||||    
T  24482203 ttatagacataaggaggtggtggtgatggagatggtggtggtggagatttgtagtaatatggtgg 24482267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 24420550 - 24420689
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    |||||||| |||| |||||| || || ||  |||| ||||| || |||||||| || ||||||||||  |||||||| || ||||||||||| || ||||    
T  24420550 gatttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacatatggaggtggtggtgaaggggatggtggtggtggtgact 24420649  T
Q  121 tatagacataaggtggtggtggtgatggggatcgtggagg 160  Q
    | |||| ||| || || |||||||| || ||| |||||||    
T  24420650 tgtagatatatggaggcggtggtgaaggagatggtggagg 24420689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 24470789 - 24470686
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    ||||||||||||| ||| || || |||||  | ||||| || ||||| |||||||| |||||||||| ||| ||||| |||||||| ||||| || ||||    
T  24470789 gatttgtagacatatggtggtggtggagatggggatggtggaggtggtgacttgtagacatatggaggaggaggtgaaggagatggaggtggtggcgact 24470690  T
Q  121 tata 124  Q
    ||||    
T  24470689 tata 24470686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 24421111 - 24421209
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggat 152  Q
    ||||| ||||||||||||||||| | ||||||||  ||||| || || ||||||||||| || ||||| |||||||| || || || ||||| ||||||    
T  24421111 gatggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggat 24421209  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 24421270 - 24421364
Alignment:
Q  69 gacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    |||||||| ||||||||||  |||||||| ||||| |||||||| |||  |||||||||||| ||||| || ||||| || ||| | ||||||||    
T  24421270 gacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtgg 24421364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 24470453 - 24470359
Alignment:
Q  69 gacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    |||||||| ||||||||||  |||||||| ||||| |||||||| |||  |||||||||||| ||||| || ||||| || ||| | ||||||||    
T  24470453 gacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggtgatggaggaggtgg 24470359  T

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Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 24470645 - 24470551
Alignment:
Q  69 gacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    |||||||| ||||||||||  |||||||| ||||| |||||||| |||  |||||||||||| ||||| || ||||| || ||| | ||||||||    
T  24470645 gacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtgg 24470551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 24471283 - 24471162
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatc 153  Q
    ||||||| |||||| |||||||| | ||| ||||  |||||||| || || || ||||| || ||| |||||||||| ||||| || |||||||| ||      
T  24471283 gatggagatggtggagacttgtaaatataaggaggcggtggtgaaggcgaaggaggtggcggtgacctatagacatatggtggaggaggtgatggagaag 24471184  T
Q  154 gtggaggtggaaatatgtagta 175  Q
    ||||||||||| || |||||||    
T  24471183 gtggaggtggagatttgtagta 24471162  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 24420980 - 24421124
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| ||| || || || ||  ||||||| |||||||| || || || |||||||| |  || || ||||| |||||||| ||||||||    
T  24420980 gtgacttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggtggaggaggaga 24421079  T
Q  119 cttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||| || | ||| ||||| || |||||||||||| |||| |||||    
T  24421080 cttgtatatatatggtggagggggtgatggggatggtggtggtgg 24421124  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 24481484 - 24481559
Alignment:
Q  63 ggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtgg 139  Q
    ||||| |||||||| |||||||| |  |||||||| ||||||||||| ||||||||||| |||||||| || |||||    
T  24481484 ggtggcgacttgtatacatatggtgg-ggtggtgatggagatggtggaggaggagacttgtagacatatggaggtgg 24481559  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 24420341 - 24420464
Alignment:
Q  52 gagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatgggga 151  Q
    ||||||| || ||||| |||||||| | ||| ||||  |||||||| || || || ||||| || ||||||||| |||| ||||| || |||||||| ||    
T  24420341 gagatggtggaggtggagacttgtaaatataaggaggcggtggtgaaggcgaaggaggtggcggtgacttatagccatatggtggaggaggtgatggaga 24420440  T
Q  152 tcgtggaggtggaaatatgtagta 175  Q
      ||||||||||| || |||||||    
T  24420441 aggtggaggtggagatttgtagta 24420464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 24420823 - 24420942
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatc 153  Q
    ||||| || |||||||||||||| |||||||||| ||| || || || || || ||||| || |||||||| ||||| ||||| || ||||| || |||     
T  24420823 gatggtgggggtggggacttgtaaacatatggaggaggaggggaaggggaaggaggtggtggtgacttatatacatatggtggagggggtgaaggtgatg 24420922  T
Q  154 gtggaggtggaaatatgtag 173  Q
    |||| |||||| || |||||    
T  24420923 gtgggggtggagatttgtag 24420942  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 24420934 - 24421049
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    ||||||||||||| |||||| || |||||  | ||||| || ||||| |||||||| |||||||| | ||| || || |||||||| ||||| || || |    
T  24420934 gatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgtagacatatggtggagggggggatggagatgggggtggtggtgatt 24421033  T
Q  121 tatagacataaggtgg 136  Q
    |||| ||||| |||||    
T  24421034 tatatacatatggtgg 24421049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 24471073 - 24470982
Alignment:
Q  72 ttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||||| |||||||||| ||| ||||| ||||| || || ||||| ||||||||||| || || || |||||||| |||||| |||| |||||    
T  24471073 ttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacgtatggagggggtggtgaaggggatggtggtggtgg 24470982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 24477392 - 24477438
Alignment:
Q  102 gatggtggtggaggagacttatagacataaggtggtggtggtgatgg 148  Q
    |||||||| ||||||||||| |||||||| || ||||||||||||||    
T  24477392 gatggtggaggaggagacttgtagacatatggaggtggtggtgatgg 24477438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 24481334 - 24481395
Alignment:
Q  81 tatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtgg 142  Q
    ||||||| ||||||||| || || ||||| ||||| |||| ||| |||||||||||||||||    
T  24481334 tatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtggtggtgg 24481395  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 24421028 - 24421172
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    ||||||| || |||| ||| || ||||| ||| | ||||| || || || |||||||| | |||||| | ||| ||||| || ||||||||||| || ||    
T  24421028 gtgatttatatacatatggtgggggaggggagggtgatggtggaggaggagacttgtatatatatggtggagggggtgatggggatggtggtggtgggga 24421127  T
Q  119 cttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||| || | ||| || |||||||| ||||||||| |||| |||||    
T  24421128 cttgtaaatatatggaggtggtggagatggggatggtggtggtgg 24421172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 24471076 - 24470952
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    |||||||| |||| |||||| || || ||  |||| ||||| || |||||||| || || |||||||  |||||||| || ||||||||||| || ||||    
T  24471076 gatttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacgtatggagggggtggtgaaggggatggtggtggtggtgact 24470977  T
Q  121 tatagacataaggtggtggtggtga 145  Q
    | |||| ||| || || ||||||||    
T  24470976 tgtagatatatggaggaggtggtga 24470952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 24481852 - 24481892
Alignment:
Q  57 ggaggtggtggggacttgtacacatatggagaaggtggtga 97  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  24481852 ggaggtgggggtgacttgtacacatatggaggaggtggtga 24481892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 24482157 - 24482197
Alignment:
Q  56 tggaggtggtggggacttgtacacatatggagaaggtggtg 96  Q
    |||||| ||||| ||||||||||||||||||| ||||||||    
T  24482157 tggaggaggtggtgacttgtacacatatggaggaggtggtg 24482197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 4602 - 4473
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| |||||| ||||| ||  | |||||||||||||| |||||||| |||||||| |  || |||||||| |||||||| ||||||||    
T  4602 gtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggaga 4503  T
Q  119 cttatagacataaggtggtggtggtgatgg 148  Q
    ||| |||||||| || ||||||||||||||    
T  4502 cttgtagacatatggaggtggtggtgatgg 4473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 4554 - 4428
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| ||||| |||| ||| || ||||| ||| | ||||| || || || |||||||| ||||||||||  |||||||| ||||| |||||||| |||      
T  4554 gtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggact 4455  T
Q  119 cttatagacataaggtggtggtggtga 145  Q
    |||||||||||| ||||| || |||||    
T  4454 cttatagacatatggtgggggaggtga 4428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 4663 - 4565
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggat 152  Q
    ||||| ||||||||||||||||| | ||||||||  ||||| || || ||||||||||| || ||||| |||||||| || || || ||||| ||||||    
T  4663 gatggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggat 4565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 4794 - 4650
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    |||| |||||||||| ||| || || || ||  ||||||| |||||||| || || || |||||||| |  || || ||||| |||||||| ||||||||    
T  4794 gtgacttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggtggaggaggaga 4695  T
Q  119 cttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||| || | ||| ||||| || |||||||||||| |||| |||||    
T  4694 cttgtatatatatggtggagggggtgatggggatggtggtggtgg 4650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 4840 - 4725
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    ||||||||||||| |||||| || |||||  | ||||| || ||||| |||||||| |||||||| | ||| || || |||||||| ||||| || || |    
T  4840 gatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgtagacatatggtggagggggggatggagatgggggtggtggtgatt 4741  T
Q  121 tatagacataaggtgg 136  Q
    |||| ||||| |||||    
T  4740 tatatacatatggtgg 4725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 4746 - 4602
Alignment:
Q  19 gtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    ||||||| || |||| ||| || ||||| ||| | ||||| || || || |||||||| | |||||| | ||| ||||| || ||||||||||| || ||    
T  4746 gtgatttatatacatatggtgggggaggggagggtgatggtggaggaggagacttgtatatatatggtggagggggtgatggggatggtggtggtgggga 4647  T
Q  119 cttatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    ||| || | ||| || |||||||| ||||||||| |||| |||||    
T  4646 cttgtaaatatatggaggtggtggagatggggatggtggtggtgg 4602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 41899950 - 41900035
Alignment:
Q  60 ggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 145  Q
    ||||||||||||||||| |||||||||| |||||||||||| || |||||||| || ||||| |||||||| |||||||| |||||    
T  41899950 ggtggtggggacttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggacttgtagacatatggtggtggaggtga 41900035  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 41900298 - 41900437
Alignment:
Q  24 ttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttat 123  Q
    |||||||||| |||||| || || ||  |||| |||||||| || || ||||| |||||||| | |||  |||| ||||| || ||||| || ||||| |    
T  41900298 ttgtagacatatggaggtggtggtgaaggagagggaggtggaggagatttgtagacatatggtggaggaagtgaaggagaaggaggtggtggtgacttgt 41900397  T
Q  124 agacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    | | ||||||||| ||||||||||||||| |||| |||||    
T  41900398 aaatataaggtggaggtggtgatggggatggtggtggtgg 41900437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 41900103 - 41900245
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    |||||||| |||| ||||||||| || ||  |||| |||||||| || || ||||| ||||| || | ||| ||||||||||| ||  |||| || ||||    
T  41900103 gatttgtaaacatatggaggcggtggtgaaggagagggaggtggaggagatttgtagacatacggtggaggaggtgagggagaaggatgtggtggtgact 41900202  T
Q  121 tatagacataaggtggtggtggtgatggggatcgtggaggtgg 163  Q
    | |  |||||||| || ||||||||||||||| |||| |||||    
T  41900203 tgtgcacataaggcggaggtggtgatggggatggtggtggtgg 41900245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 41900151 - 41900256
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    |||||||||||||  || || ||||| ||| |||| ||| ||||||| ||||||| |||||| || | ||||||||| || ||||||||||| || ||||    
T  41900151 gatttgtagacatacggtggaggaggtgagggagaaggatgtggtggtgacttgtgcacataaggcggaggtggtgatggggatggtggtggtggggact 41900250  T
Q  121 tataga 126  Q
    | ||||    
T  41900251 tgtaga 41900256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 41900535 - 41900632
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggaga 118  Q
    ||||||||||||| ||| || ||||| ||  |||| ||||||||||| ||||| || | ||| || | ||||||||| |||||||||||||| |||||    
T  41900535 gatttgtagacatatggcggaggaggtgaaggagagggaggtggtggtgacttataaatataaggtggaggtggtgaaggagatggtggtggtggaga 41900632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 41900295 - 41900362
Alignment:
Q  69 gacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtgg 136  Q
    |||||||| ||||||||||  |||||||| ||||| || ||||||||||| || |||||||| |||||    
T  41900295 gacttgtagacatatggaggtggtggtgaaggagagggaggtggaggagatttgtagacatatggtgg 41900362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 41899857 - 41899915
Alignment:
Q  63 ggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagactt 121  Q
    ||||| |||||||| |||||||||| ||| ||||| || |||||||| |||||||||||    
T  41899857 ggtggagacttgtaaacatatggaggaggcggtgaaggtgatggtgggggaggagactt 41899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 41900089 - 41900179
Alignment:
Q  55 atggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 145  Q
    |||| ||||| || || ||||| ||||||||||  |||||||| ||||| || ||||||||||| || |||||||| ||||| || |||||    
T  41900089 atggtggtggaggagatttgtaaacatatggaggcggtggtgaaggagagggaggtggaggagatttgtagacatacggtggaggaggtga 41900179  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 41900343 - 41900448
Alignment:
Q  21 gatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagact 120  Q
    ||||||||||||| ||| || ||| | ||  |||| ||||||||||| |||||||| | ||| || | ||||||||| || ||||||||||| || ||||    
T  41900343 gatttgtagacatatggtggaggaagtgaaggagaaggaggtggtggtgacttgtaaatataaggtggaggtggtgatggggatggtggtggtggggact 41900442  T
Q  121 tataga 126  Q
    | ||||    
T  41900443 tgtaga 41900448  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 41900279 - 41900323
Alignment:
Q  101 agatggtggtggaggagacttatagacataaggtggtggtggtga 145  Q
    ||||||||| ||||||||||| |||||||| || |||||||||||    
T  41900279 agatggtggaggaggagacttgtagacatatggaggtggtggtga 41900323  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 11902156 - 11902065
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 145  Q
    |||||||||||||| |||||||||||||| ||||  |  ||||| |||||||||||||| || ||||| || |||||||| |||||||||||    
T  11902156 gatggaggtggtggtgacttgtacacataaggaggtgacggtgaaggagatggtggtggtggtgacttgtatacataaggaggtggtggtga 11902065  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 11879554 - 11879469
Alignment:
Q  60 ggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 145  Q
    |||||||| |||||||||||||| ||||  |||||||| |||||||| ||||| || ||||| || |||||||| |||||||||||    
T  11879554 ggtggtggtgacttgtacacataaggaggtggtggtgaaggagatggcggtggtggtgacttgtacacataaggaggtggtggtga 11879469  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 11902418 - 11902377
Alignment:
Q  80 atatggagaaggtggtgagggagatggtggtggaggagactt 121  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  11902418 atatggaggaggtggtgagggagatggtggtggaggagactt 11902377  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 11879514 - 11879445
Alignment:
Q  52 gagatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagactt 121  Q
    ||||||| |||||||| |||||||||||||| ||||  |||||||| |||| ||||||||| || |||||    
T  11879514 gagatggcggtggtggtgacttgtacacataaggaggtggtggtgaaggagttggtggtggtggtgactt 11879445  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 11901991 - 11901906
Alignment:
Q  54 gatggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtgg 139  Q
    ||||| || ||||| ||||| |||||||| |||| ||||||||||||||| || ||||| || ||||| ||  |||||||||||||    
T  11901991 gatgggggaggtggtgacttatacacataaggaggaggtggtgagggagacggcggtggtggggacttgtactcataaggtggtgg 11901906  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 11879713 - 11879685
Alignment:
Q  93 ggtgagggagatggtggtggaggagactt 121  Q
    |||||||||||||||||||||||||||||    
T  11879713 ggtgagggagatggtggtggaggagactt 11879685  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 52821035 - 52821099
Alignment:
Q  57 ggaggtggtggggacttgtacacatatggagaaggtggtgagggagatggtggtggaggagactt 121  Q
    ||||||||||||||||||||   |||||||| ||| || ||||| || |||||||| ||||||||    
T  52821035 ggaggtggtggggacttgtaataatatggaggaggaggggagggtgagggtggtgggggagactt 52821099  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 52821119 - 52821171
Alignment:
Q  93 ggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 145  Q
    ||||||||||| ||||||||||||||||| |||   ||||||||||| |||||    
T  52821119 ggtgagggagagggtggtggaggagacttgtagtagtaaggtggtggaggtga 52821171  T

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