View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_18 (Length: 223)
Name: NF8851_low_18
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 54268127 - 54267930
Alignment:
| Q |
17 |
catttatacgtacattatctagtgttcatatgtacgtacgtattttattttgtgaaagaaaaggtgtgtacagtatttcattgtttgccaagataattag |
116 |
Q |
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| T |
54268127 |
catttatacgtacatca-ctagtgttcatatgtacgtacgtattttattttgtgaaagaaaaggtgtgtacagtatttcattgtttgctaagataattag |
54268029 |
T |
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| Q |
117 |
agacaaagattttgaacttaccatatgttccgagataaagatacttattgccaaaaactttgccaatccgtgcctcccaccttccgttatgatgatgtc |
215 |
Q |
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| T |
54268028 |
agacaaagattttgaacttaccatatgttccgagataaagatacttattgccaaaaactttgccaatccgtgcctcccaccttccgttatgatgatgtc |
54267930 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 25051958 - 25051874
Alignment:
| Q |
131 |
aacttaccatatgttccgagataaagatacttattgccaaaaactttgccaatccgtgcctcccaccttccgttatgatgatgtc |
215 |
Q |
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| T |
25051958 |
aactaaccatatgttccaagataaagatatttgttgccaaaaaccctaccgatacgagcctcccaccttccgttatgatggtgtc |
25051874 |
T |
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