View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8851_low_3 (Length: 515)
Name: NF8851_low_3
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 156 - 494
Target Start/End: Original strand, 50983272 - 50983610
Alignment:
| Q |
156 |
tactgcttcacgaaatcgaagaaaccctcaaatcgaaacaagcgaaaacgaattcgaatctcaaaacccaatcaactttccaccacctcgaacaccgtta |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50983272 |
tactgcttcacgaaatcgaagaaaccctcaaatcgaaacaagcgaaaacgaattcgaatctcaaaacccaatcaactttccaccacctcgaacaccgtta |
50983371 |
T |
|
| Q |
256 |
aattccatacccgatccatctcagtatcatgaacctgaacttcttcgatacgctcgttcttcctccgatcggttcgtgaacactccttccattcggattc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50983372 |
aattccatacccgatccatctcagtatcatgaacctgaacttcttcgacacgctcgttcttcctccgatcggttcgtgaacactccttccattcggattc |
50983471 |
T |
|
| Q |
356 |
caaaacctcattccgaacctaactctgctcagagcacaccagctagaaattcttcacgagtttcactcggtggtgggggaggaagcagtagagtgagctt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50983472 |
caaaacctcattccgaacctaactctgctcagagcacaccagctagaaattcttcacgagtttcactcggtggtggaggaggaagcagtagagtgagctt |
50983571 |
T |
|
| Q |
456 |
aggaaaaggatttctgaaaggaactgacataatttcaac |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50983572 |
aggaaaaggatttctgaaaggaactgacataatttcaac |
50983610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 50983140 - 50983253
Alignment:
| Q |
18 |
ccttcatcaccaccatttcaagtactctttcatatttctcattcttcaaatctaagaaccattaaaaatgattcccagtagctccacccgcattaattcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50983140 |
ccttcatcaccaccatttcaagtactctttcatatttctcattcttcaaatctaagaaccattaaaaatgattcccagtagctccacccgcattaattcc |
50983239 |
T |
|
| Q |
118 |
aaaatgcagaagga |
131 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
50983240 |
aaaatgcagaagga |
50983253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University