View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_4 (Length: 503)
Name: NF8851_low_4
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 1095299 - 1094815
Alignment:
| Q |
1 |
atgaaaatatttttatgcaacctccggtc------gcctaaacctccactcacattcaacatatcttccacaaatgcttgtttattaattgataaataaa |
94 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1095299 |
atgaaaatatttttatgcaacctccggtccatgtagcctaaacctccactcacattcaacatatcttccacaaatgcttgtttattaattgataaataaa |
1095200 |
T |
|
| Q |
95 |
ctaaaaagattgcttgagtttatccataaaaatttctctgatcacccacaaatcaaaccaaaataatgtatatataccatttccaactacttttggcatg |
194 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1095199 |
ctaaaaagattgcttgagt--atccataaaaatttctctgatcacccacaaatcaaaccaaaataaagtatatataccatttccaactacttttggcatg |
1095102 |
T |
|
| Q |
195 |
cggttagaaaatcaactaccaggaacaccaccactatctgtactcaacattagtttttccaacaagatgaatctagattacaccctataaaaaaccccat |
294 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1095101 |
cggttagaaaaccaactaccaggaacaccaccactatctgtactcaacattagtttttccaccaagatgaatctagattacaccctataaaaaaccccat |
1095002 |
T |
|
| Q |
295 |
ccaccccatatttacttgataaaaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaagcaatatttacctttgg |
394 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1095001 |
ccaccccatatttacttgttaaaaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaagcaatatttacctttgg |
1094902 |
T |
|
| Q |
395 |
aacctaattaagcaagcaagcatcaattaaaaccgaaattctctacttgagcaagtactcatgaatcatgatactactgatccaatgagcaatg |
488 |
Q |
| |
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| T |
1094901 |
aacctaattaagcaagcaagcatcaattaaaaccgaaattctctacttgagcaagtactc-------atgatactactgatccaatgagcaatg |
1094815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 35 - 434
Target Start/End: Complemental strand, 1116696 - 1116295
Alignment:
| Q |
35 |
aacctccactcacattcaacatatcttccacaaatgcttgtttattaattgataaataaactaaaaagattgcttgagtttatccataaaaatttctctg |
134 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||| | |||||||||||||||| ||| ||||||||||||| || |||||||||||||| |||||| |
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|
| T |
1116696 |
aacctccactca--ttcaacttatctttcacaaacacctgtttattaattgatagatatactaaaaagattggttaagtttatccataaatgtttctcca |
1116599 |
T |
|
| Q |
135 |
atcacccacaaatcaaaccaaaataatgtatatataccatttccaactacttttggcatgcggttagaaaatcaactaccaggaac---accaccactat |
231 |
Q |
| |
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| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||| || ||| |||||||| ||| |||||||||| |||||||| || |
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| T |
1116598 |
accacccacaaatcaaaccaaaataaagtatctataccatttccaaccacttttgacaagcgattagaaaaccaaataccaggaacattaccaccaccat |
1116499 |
T |
|
| Q |
232 |
ctgtactcaacattagtttttccaacaagatgaatctagattacaccctataaaaaacccca-tccaccccatatttacttgataaaaatttaaaccata |
330 |
Q |
| |
|
|| |||||||| |||||||| ||| |||||||||||||||||||||| | | |||||||||| | ||| ||||||||||||||| |||||||||||||| |
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| T |
1116498 |
ctttactcaacgttagttttcccaccaagatgaatctagattacaccttgtgaaaaaccccatttcactccatatttacttgattaaaatttaaaccatt |
1116399 |
T |
|
| Q |
331 |
aactccattcacacccctcattctcctacatcacttctccaacaaaagcaatatttacctttggaacctaattaagcaagcaagcatcaattaaaaccga |
430 |
Q |
| |
|
||||| ||||||| | ||||||| || ||| |||||||||||||||| ||||||| |||||||| ||| ||||||| | ||||||||||| ||||||| | |
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| T |
1116398 |
aactctattcacatcgctcattcaccaacaccacttctccaacaaaatcaatattcacctttgggacccaattaagaaggcaagcatcaactaaaaccaa |
1116299 |
T |
|
| Q |
431 |
aatt |
434 |
Q |
| |
|
|||| |
|
|
| T |
1116298 |
aatt |
1116295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 441
Target Start/End: Complemental strand, 1098087 - 1097869
Alignment:
| Q |
221 |
accaccactatctgtactcaacattagtttttccaac-aagatgaatctagattacaccctataaaaaaccccat---ccaccccatatttacttgataa |
316 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
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|
| T |
1098087 |
accaccaccatctttactcaacattagtttttcccaccaagataaatctagattacaccaagcaaaaaaccccattatccaccccatatttacttcataa |
1097988 |
T |
|
| Q |
317 |
aaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaagcaatatttacctttggaacctaattaagcaagcaagca |
416 |
Q |
| |
|
||||||||| ||||||| ||||| | || |||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
1097987 |
gtatttaaaccgtaaactctattcata-----tatcctccaacaccacttctccaa-aaaagcaatatttacctttggaacccaattaagcaagcaagta |
1097894 |
T |
|
| Q |
417 |
tcaattaaaaccgaaattctctact |
441 |
Q |
| |
|
| |||| || || ||||| |||||| |
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|
| T |
1097893 |
taaatttaagccaaaattgtctact |
1097869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 1098216 - 1098162
Alignment:
| Q |
27 |
gtcgcctaaacctccactcacattcaacatatcttccacaaatgcttgtttattaa |
82 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1098216 |
gtcgcctaaacctcca-tcacattcaacatatcttccacaaatgcctgtttattaa |
1098162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 1121217 - 1121176
Alignment:
| Q |
27 |
gtcgcctaaacctccactcacattcaacatatcttccacaaa |
68 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1121217 |
gtcgcctaaacctccactcacattcaacatatcttccacaaa |
1121176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 8115646 - 8115592
Alignment:
| Q |
33 |
taaacctccactcacattcaacatatcttccacaaatgcttgtttattaattgat |
87 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
8115646 |
taaacctccactcacattcaacatatcttccacaaacacctgtttattaattgat |
8115592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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