View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_5 (Length: 481)
Name: NF8851_low_5
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 3827791 - 3827329
Alignment:
| Q |
19 |
gaacaactaatcgtaattaaatatatgagttagggttcaaacttaagttttacctaagcacacatagacatttacttatagacaattgacaacaaaattg |
118 |
Q |
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| T |
3827791 |
gaacaactaatcgtaattaaatatatgagttagggttcaaacttaagttttacctaagcacacatagacatttacttatagacaattgacaacaaaattg |
3827692 |
T |
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| Q |
119 |
ttgtcttacatgattttacctatagacaaatgacatctagtgaatgattttgtctgcaggtagaagtttattttttgcaaatttgagtccccctaacttt |
218 |
Q |
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| T |
3827691 |
ttgtcttacatgattttacctatagacaaatgacatctagtgaatgattttgtccgcaggtagaagtttattttttgcaaatttgagtccccctaacttt |
3827592 |
T |
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| Q |
219 |
gaggccatgtgttaaaggccttcttgcacttgatttcatattaaaggaaataaagatcaattagaagtaacaatttatgatttacctggcagtgtattga |
318 |
Q |
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| T |
3827591 |
gaggccatgtgttaaaggccttcttgcacttgatttcatattaaaggaaataaagatcaattagaagtaacaatttatgatttacctggcagtgtattga |
3827492 |
T |
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| Q |
319 |
atggaaaacagaatcttcattgaccttataactagcattaacaatatcaactccttcttcatgaagaactcgaagggtttcactgaacaaaaactgagac |
418 |
Q |
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| T |
3827491 |
atggaaaacagaatcttcattgaccttataactagcattaacaatatcaactccttcttcatgaagaactcgaaaggtttcgctgaacaaaaactgagac |
3827392 |
T |
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| Q |
419 |
tccaatccagttattagaacaacctctaagactaaaccaatttgttgtatcttaatttttgga |
481 |
Q |
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| T |
3827391 |
tccaatccagttattagaacaacctctaagactaaaccaatttgttgtatcttaatttttgga |
3827329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 983027 - 982958
Alignment:
| Q |
102 |
aattgacaacaaaattgttgtcttacatgattttacctatagacaaatgacatctagtgaatgattttgt |
171 |
Q |
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| T |
983027 |
aattgactgcaaaattattgtctttcataattttacctatagaaaaatgacatttagtgacggattttgt |
982958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 11673500 - 11673571
Alignment:
| Q |
102 |
aattgacaacaaaattgttgtcttacatgattttacctatagacaaatgacatctagtgaatgattttgtctg |
174 |
Q |
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| T |
11673500 |
aattgacagcaaaattgatgtctttcaac-ttttacctatagaaaaatgacatttagtgacagattttgtctg |
11673571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 41067720 - 41067753
Alignment:
| Q |
189 |
ttttttgcaaatttgagtccccctaactttgagg |
222 |
Q |
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| T |
41067720 |
tttttttcaaatttgagtccccctaactttgagg |
41067753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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