View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8851_low_6 (Length: 420)

Name: NF8851_low_6
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8851_low_6
NF8851_low_6
[»] chr6 (2 HSPs)
chr6 (1-401)||(13328693-13329096)
chr6 (7-61)||(1217504-1217557)
[»] chr1 (3 HSPs)
chr1 (1-113)||(25713130-25713242)
chr1 (1-80)||(52964425-52964503)
chr1 (1-83)||(52961320-52961401)
[»] chr2 (3 HSPs)
chr2 (1-119)||(30701252-30701370)
chr2 (1-57)||(30701394-30701450)
chr2 (1-68)||(30701463-30701530)
[»] chr8 (2 HSPs)
chr8 (1-80)||(37001080-37001158)
chr8 (1-60)||(36997000-36997056)
[»] chr7 (1 HSPs)
chr7 (1-83)||(37625152-37625233)
[»] chr4 (3 HSPs)
chr4 (1-82)||(33831156-33831235)
chr4 (1-82)||(33835091-33835170)
chr4 (1-82)||(37920552-37920631)
[»] chr5 (1 HSPs)
chr5 (1-82)||(8081382-8081461)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 13329096 - 13328693
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaatgaatgaattattcaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  13329096 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcatacgtcattgtaatgaatgagttattcaatt 13328997  T
Q  101 taaattattcaagttggtaccagtgcaggttctggatccaggtttttagggttggccgtcgtcaaggctaaccctagaagtttatgcttgtttgttgtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328996 taaattattcaagttggtaccagtgcaggttctggatccaggtttttagggttggccgtcgtcaaggctaaccctagaagtttatgcttgtttgttgtct 13328897  T
Q  201 actttgaaatagtgactgcaccgccgtcgccggcgaagtttcatgtgggtctattttaaacacgcgccctaccataagcaccaaaggtcgtcgacctatc 300  Q
    ||||||||||||| | |        |||||||||||||||||||  | || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13328896 actttgaaatagttatt--------gtcgccggcgaagtttcatcagagtttatattaaacacgcgccctaccataagcaccaaaggtcgtcgacctatc 13328805  T
Q  301 aacacctaaaacgccactgccaat-----taca------gacacacgccgccatcacattagataattatcggcttgtggagtacacgcgccaccctctg 389  Q
    |||||||||||||||||||| | |     ||||      ||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||    
T  13328804 aacacctaaaacgccactgcaattatagatacacgtgtcgacacacgccgccatcacattaggtaattatcgacgtgtggagtacacacgccaccctctg 13328705  T
Q  390 tgcatcaccttc 401  Q
     |||||||||||    
T  13328704 ggcatcaccttc 13328693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 1217557 - 1217504
Alignment:
Q  7 tgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatata 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1217557 tgcttgatttagtttccttatttatgttttcttgagagattctct-gtgtatata 1217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 25713130 - 25713242
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaatgaatgaattattcaatt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    || |||||||||     
T  25713130 ttattatgcttgacttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcatacatcattgtaatattagagttattcaatc 25713229  T
Q  101 taaattattcaag 113  Q
    |||||||||||||    
T  25713230 taaattattcaag 25713242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 52964425 - 52964503
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgt 80  Q
    |||||||| |||||||||||| ||||||| || ||| ||||||||||||||| ||||||||||  ||  |||||||||||    
T  52964425 ttattatggttgatttagttttcttattt-tgctttattgagagattctctcttgtatataagcttgtatacatcattgt 52964503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 52961320 - 52961401
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaat 83  Q
    |||||||| |||||||||||| ||||||| || ||| |||||||||| |||| |||| |||||| ||  ||||||||||||||    
T  52961320 ttattatggttgatttagtttgcttattt-tgctttattgagagattttctcttgtacataagtttgtatacatcattgtaat 52961401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30701370 - 30701252
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaatgaatgaattattcaatt 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |||| ||||  |||| ||||||||  |  | |||||||||     
T  30701370 ttattatgcttgatttagttttcttatttatgctttcttgagagattctcttgtgtatgtaagagtgcacacattattgtaatatacaagttattcaatc 30701271  T
Q  101 taaattattcaagttggta 119  Q
    |||||||||||||||||||    
T  30701270 taaattattcaagttggta 30701252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30701450 - 30701394
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgta 57  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  30701450 ttattatgcttgatttagtttccttatttatgctttcttgagagattatcttgtgta 30701394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30701530 - 30701463
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgc 68  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||| ||||    
T  30701530 ttattatgcttgatttagtttctttatttatgctttcttgagagattatcttgtgtatgtaagagtgc 30701463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37001080 - 37001158
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgt 80  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||  ||| |||||||||||    
T  37001080 ttattatggttgatttagtttccttattt-tgttttcatgagagattctctcttgtatataagcttgcatacatcattgt 37001158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36997000 - 36997056
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatat 60  Q
    |||||||| |||||||||||||||||||| ||||||| |  |||||||||||||||||||    
T  36997000 ttattatggttgatttagtttccttattt-tgttttcat--gagattctctcgtgtatat 36997056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37625152 - 37625233
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaat 83  Q
    |||| ||| ||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| ||  | ||||||||||||    
T  37625152 ttatcatggttgatttagtttcattattt-tgttttattgagatattctctcgtgtatataagtttgtatgcatcattgtaat 37625233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33831156 - 33831235
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 82  Q
    |||||||  |||||||||||||||| |||  | |||||||||| |||||||| ||||||||||  ||| |||||||||||||    
T  33831156 ttattatagttgatttagtttcctttttt--gctttcttgagatattctctcttgtatataagcttgcatacatcattgtaa 33831235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33835091 - 33835170
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 82  Q
    |||||||  |||||||||||||||| |||  | |||| ||||| |||||||| ||||||||||  ||| |||||||||||||    
T  33835091 ttattatagttgatttagtttcctttttt--gctttcctgagatattctctcttgtatataagcttgcatacatcattgtaa 33835170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37920631 - 37920552
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 82  Q
    |||||||  |||||||||||||||| |||  | |||| ||||| |||||||| ||||||||||  ||| |||||||||||||    
T  37920631 ttattatagttgatttagtttcctttttt--gctttcctgagatattctctcttgtatataagcttgcatacatcattgtaa 37920552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8081461 - 8081382
Alignment:
Q  1 ttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcgtacatcattgtaa 82  Q
    |||||||  |||||||||||||||| |||  | |||| ||||| |||||||| ||||||||||  ||| |||||||||||||    
T  8081461 ttattatagttgatttagtttcctttttt--gctttcctgagatattctctcttgtatataagcttgcatacatcattgtaa 8081382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University