View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_7 (Length: 378)
Name: NF8851_low_7
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 52512143 - 52511836
Alignment:
| Q |
9 |
tggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttct |
108 |
Q |
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| T |
52512143 |
tggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttct |
52512044 |
T |
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| Q |
109 |
actttgctcatttcnnnnnnnncttagtaaacgactaaattgacagattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgt |
208 |
Q |
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| T |
52512043 |
aatttgctcatttcttttttt-cttagtaaacgactaaattgactgattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgt |
52511945 |
T |
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| Q |
209 |
gccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttccaaattcttagaaggtatgtata |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52511944 |
gccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttcccaattcttagaaggtatgtata |
52511845 |
T |
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| Q |
309 |
ctactcatg |
317 |
Q |
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||||||||| |
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| T |
52511844 |
ctactcatg |
52511836 |
T |
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