View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8851_low_8 (Length: 353)
Name: NF8851_low_8
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 8284593 - 8284917
Alignment:
| Q |
13 |
catcaaacactcacatcaccacccaactcctcatcatcatcttcttctggtcatcaaaaagcctctcccgatgaaattgtaatttcgaacaatattggat |
112 |
Q |
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| T |
8284593 |
catcaaacactcacatcaccacccaactcatcatcatcatcttcttctggtcatcaaaaagcttctcccgatgaaattgtaatttcgaacaatatcggat |
8284692 |
T |
|
| Q |
113 |
actctaatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaac |
212 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| | |||||||| ||| |
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| T |
8284693 |
tctccaatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaacccctactggaac |
8284792 |
T |
|
| Q |
213 |
cgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaat |
312 |
Q |
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| T |
8284793 |
cgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaat |
8284892 |
T |
|
| Q |
313 |
cacttatctggtttcatgaactatg |
337 |
Q |
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| T |
8284893 |
cacttatctggtttcatgaactatg |
8284917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 326
Target Start/End: Original strand, 34694753 - 34694959
Alignment:
| Q |
123 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
222 |
Q |
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| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
|
| Q |
223 |
ctacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttat |
319 |
Q |
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||||||||||||||||||| ||||||||| || ||||||||||||||| || ||||||| ||||| ||||| | | ||| | |||||||| |||| | |
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| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttct |
34694952 |
T |
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| Q |
320 |
ctggttt |
326 |
Q |
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||||||| |
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| T |
34694953 |
ctggttt |
34694959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
206 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
294 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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