View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8851_low_9 (Length: 341)
Name: NF8851_low_9
Description: NF8851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8851_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 35466469 - 35466188
Alignment:
| Q |
15 |
tggtcaaacatcaaactcaaggtacataatacataataattgacaattgtaatgtgaaactgggaaacagttttctccaacagatatatagtgattagtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35466469 |
tggtcaaacatcaaactcaaggtacataatacataataattgacaattgtaatgtgaaactgggaaacagttttctccaacagatatatagtgattagtg |
35466370 |
T |
|
| Q |
115 |
tatagtttatagttttatatatctgtctttttctcaactcgcatgtcactattgttggggtgcgagcaacggcgtgcaacccaccttctttcccgcacat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35466369 |
tatagtttatagttttatatatctgtctttttctcaactcgcatgtcactattgttggggtgcgagcaacggcgtgcaacccaccttctttcccgcacat |
35466270 |
T |
|
| Q |
215 |
aatcctaccccacaaacactaacaaacaaaatacacattatcaaaaccctaataagcatattcccattcaacaaacattatc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35466269 |
aatcctaccccacaaacactaacaaacaaaatacacattatcaaaaccctaataagcatattcccattcaataaacattatc |
35466188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University