View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_high_2 (Length: 448)
Name: NF8852_high_2
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 8820645 - 8820228
Alignment:
| Q |
14 |
aatacaacatttcaagaaggaaaaaaccaatttattttattactttggaactattttgcagatgtgtatattcttgtgtatgggtggaaacagcagcaca |
113 |
Q |
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| T |
8820645 |
aatacaacatttcaagaaggaaaaaaccaatttattttattactttggaactattttgcagatgtgtatattcttgtgtatgggtggaaacagcagcaca |
8820546 |
T |
|
| Q |
114 |
tggatgaacacagcagtacttgtaacttgcatgagaaactttccaaaaaaccgtggtccaatttccggcattctaaagggttatgtaggactcagcacag |
213 |
Q |
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| T |
8820545 |
tggatgaacacagcagtacttgtaacttgcatgagaaactttccaaaaaatcgtggtccaatttccggcattctaaagggttatgtaggactcagcacag |
8820446 |
T |
|
| Q |
214 |
caatcttcactgacatatgcacagctttattttcctcagacccatcgaagtttctattaatgctcacaattgttcctgccatcatttgtctcattgctgc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8820445 |
caatcttcactgacatatgcacagctttattttcctcagacccatcgaagtttctattaatgctcacaattgttcctgccatcatttgtctcattgctgc |
8820346 |
T |
|
| Q |
314 |
tattttccttcatgaaactccaccagcttcaacttccacagaagaaaataaagagacgcagttcttcaatgtgtttaacttgattgcagttacagtagct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8820345 |
tattttccttcatgaaactccaccagcttcaacttccacagaagaaaataaagagacgcagttcttcaatgtgtttaacttgattgcagttacagtagct |
8820246 |
T |
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| Q |
414 |
gtttatctcttggcattt |
431 |
Q |
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| T |
8820245 |
gtttatctcttggcattt |
8820228 |
T |
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