View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_high_3 (Length: 420)
Name: NF8852_high_3
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 35170669 - 35170281
Alignment:
| Q |
14 |
cagagagtgagtaaccaccttatcaaacctcgatgaatcaagagaatgaatacaagaagccctcaaagacgacaagaacgaagcacgagtcaaagcaatt |
113 |
Q |
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| T |
35170669 |
cagagagtgagtaaccaccttatcaaacctcgatgaatcaagagaatgaatacaagaagccctcaaagacgacaagaacgaagcacgagtcaaagcaatt |
35170570 |
T |
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| Q |
114 |
tgtcccaacgcaacggaagccgctttacgtgttttccaatccgtatcattcaaaccctctctaatactaccaacagccgtcaaaagaacactctgcgtcg |
213 |
Q |
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| T |
35170569 |
tgtcccaacgcaacggaagccgctttacgtgttttccaatccgtatcattcaaaccctctctaatactaccaacagcagtcaaaagaacactctgcgtcg |
35170470 |
T |
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| Q |
214 |
aagctccaccagcctgaataatacacctattcaactcaatcaacgcaggtttcgccataaaatgtggattcttaagcaacttaagaatcctaatcaacat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35170469 |
aagctccaccagcctgaataatacacctattcaactcaatcaacgcaggtttcgccataaaatgtggattcttaagcaacttaagaatcctaatcaacat |
35170370 |
T |
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| Q |
314 |
accatacaaaaccgaaacaggaggattccgcgtgttttgtacaataccagcaagacaaaaagcagaagcagactgaacatgcttattct |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35170369 |
accatacaaaaccgaaacaggaggattccgcgtgttttgtacaataccagcaagacaaaaagcagaagcagactgaacatgcttattct |
35170281 |
T |
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