View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_high_4 (Length: 361)
Name: NF8852_high_4
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_high_4 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 6073966 - 6073622
Alignment:
| Q |
1 |
atcaaacatatgtatctgaagacatcatgtggctctcaaaagacatattatacagcataaaattcctatttcattttacaatcatcattttgggaccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6073966 |
atcaaacatatgtatctgaagacatcatgtggctctcaaaagacatattatagagcataaaattcctatttcattttacaatcatcattctgggaccata |
6073867 |
T |
|
| Q |
101 |
atctcgattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctacca |
200 |
Q |
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| T |
6073866 |
atctcgattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctacca |
6073767 |
T |
|
| Q |
201 |
tcattctaatgattatcaacctcctacaatcatttacacacgtgttcctttatttacccattggctcaataag-nnnnnnnnncattgtctcaataaata |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6073766 |
tcatgctaatgattatcaacctcctacaatcatttacacacatgttcctttatttacccattgggtcaataagaaaaaaaaaacattgtctcaataaata |
6073667 |
T |
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| Q |
300 |
tttcttgggtattgattcaagaattggtaatctgcatcctgatgt |
344 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
6073666 |
tttcttgggtattggttcaagaattggtaatttgcatcctgatgt |
6073622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 6069329 - 6069084
Alignment:
| Q |
10 |
atgtatctgaagacatcatgtggctctcaaaagacatattatacagcataaaattcctatttcattttacaatcatcattttgggaccataatctcgatt |
109 |
Q |
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| T |
6069329 |
atgtatctgaagatatggggtggctctcaaaaggcatattattgagcataacattcctatttcattttacaatcatcattt-gggaccataatcttgttt |
6069231 |
T |
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| Q |
110 |
attctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcattctaa |
209 |
Q |
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| T |
6069230 |
attctatgcatgcatgcaaaaattgtaccacaatacttgagcactgaaattgacatatactttgcgaactactatatataagtttctacaatcatgctaa |
6069131 |
T |
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| Q |
210 |
tgattatcaacctcctacaatcatttacacacgtgttcctttattta |
256 |
Q |
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| T |
6069130 |
tcatcatcaacctcctacaatcatttacacacatgttcctttattta |
6069084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 5697553 - 5697656
Alignment:
| Q |
155 |
gaaattgacatatactttgcaaaccactata--tataagtttctaccatcattctaatgattatcaacctcctacaatcatttacacacgtgttccttta |
252 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| || |||| |||||||||||||||||||||| |||||||||| |
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| T |
5697553 |
gaaattgacatatactttgcataccactatatatataagtttctacaatcatgctaatcatcatcagcctcctacaatcatttacacacatgttccttta |
5697652 |
T |
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| Q |
253 |
ttta |
256 |
Q |
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|||| |
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| T |
5697653 |
ttta |
5697656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 6069078 - 6069020
Alignment:
| Q |
283 |
cattgtctcaataaatatttcttgggtattgattcaagaattggtaatctgcatcctga |
341 |
Q |
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| T |
6069078 |
cattgcctcaataaatatttcttgtgtattggttcaagaattggtaatctgcatcctga |
6069020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 5697668 - 5697716
Alignment:
| Q |
289 |
ctcaataaatatttcttgggtattgattcaagaattggtaatctgcatc |
337 |
Q |
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| T |
5697668 |
ctcaataaatatttcttgtgtattggtttaagaattggtaatctgcatc |
5697716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 56 - 253
Target Start/End: Complemental strand, 509 - 312
Alignment:
| Q |
56 |
cataaaattcctatttcattttacaatcatcattttgggaccataatctcgattattctatacatgcatgcaaaaattgtaccacaatacttgagctctg |
155 |
Q |
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||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
509 |
cataacattcctatttcatttttgaatcatcattttcggaccatagtctcgattattctatacatgcatgcaaaaattgtaccacaacacttgagcactg |
410 |
T |
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| Q |
156 |
aaattgacatatactttgcaaaccactatatataagtttctaccatcattctaatgattatcaacctcctacaatcatttacacacgtgttcctttat |
253 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| | ||||||||| |
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| T |
409 |
aaattgacataaactttgcaaaccactatatataagtttctacaatcatgctaatcatcatcaacctcctacaatcatttacacacatattcctttat |
312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 299 - 251
Alignment:
| Q |
289 |
ctcaataaatatttcttgggtattgattcaagaattggtaatctgcatc |
337 |
Q |
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||||||||||||||||| |||||| || |||||||||||||||||||| |
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| T |
299 |
ctcaataaatatttcttatgtattggtttaagaattggtaatctgcatc |
251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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