View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8852_low_1 (Length: 545)

Name: NF8852_low_1
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8852_low_1
NF8852_low_1
[»] chr8 (9 HSPs)
chr8 (214-528)||(39187829-39188143)
chr8 (1-185)||(39187619-39187803)
chr8 (340-432)||(3505269-3505361)
chr8 (456-524)||(2874610-2874681)
chr8 (456-524)||(2889284-2889355)
chr8 (456-524)||(3145507-3145578)
chr8 (456-524)||(3160374-3160445)
chr8 (215-263)||(2889044-2889092)
chr8 (215-263)||(3145770-3145818)
[»] chr7 (1 HSPs)
chr7 (340-432)||(43313384-43313475)
[»] chr4 (1 HSPs)
chr4 (340-432)||(34743855-34743946)
[»] chr3 (2 HSPs)
chr3 (340-432)||(21531666-21531757)
chr3 (340-432)||(35167607-35167698)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 214 - 528
Target Start/End: Original strand, 39187829 - 39188143
Alignment:
Q  214 gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39187829 gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat 39187928  T
Q  314 ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39187929 ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcg 39188028  T
Q  414 ttatggtttcagtttaagatacatgatacaacttgccacacaaacaaggtaatgttgtatattatcaaatgatagatattagcgtagaggctccacaatg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188029 ttatggtttcagtttaagatacatgatacaacttgccacacaaacaaggtaatgttgtatattatcaaatgatagatattagcgtagaggctccacaatg 39188128  T
Q  514 gtggaataacaaaat 528  Q
    |||||||||||||||    
T  39188129 gtggaataacaaaat 39188143  T

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Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 39187619 - 39187803
Alignment:
Q  1 aaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaacgtattgcatagaagcgagaatgtactacatcatatgcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39187619 aaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaatgtattgcatagaagcgagaatgtactacatcatatgcatc 39187718  T
Q  101 gccttaatatccttacgcctgtgtataaattaaaagtaaattcattttacaacaagaagcaactgcttgttcatgtaaaactcgg 185  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39187719 gccttaatatccatacgcctgtgtatagattaaaagtaaattcattttacaacaagaagcaactccttgttcatgtaaaactcgg 39187803  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 3505269 - 3505361
Alignment:
Q  340 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 432  Q
    |||||||||| |||||  | ||||||| | |||||| |||||| |||||| ||||||  |||||| ||||||| |||||||||||||| ||||    
T  3505269 cttcaagtccctgacaactttcttctcatgatcactaaaggaagtatcatcctctatttactttaaagcctgcattatggtttcagttcaaga 3505361  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 2874610 - 2874681
Alignment:
Q  456 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataaca 524  Q
    ||||||||||| ||||||||||   |||||||||| |||| ||||||||||||  |||| ||||||||||||    
T  2874610 aacaaggtaattttgtatattacgatcaaatgataaatatgagcgtagaggctatacaagggtggaataaca 2874681  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 2889284 - 2889355
Alignment:
Q  456 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataaca 524  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| ||||||||||||    
T  2889284 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataaca 2889355  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 3145578 - 3145507
Alignment:
Q  456 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataaca 524  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| ||||||||||||    
T  3145578 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataaca 3145507  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 3160445 - 3160374
Alignment:
Q  456 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataaca 524  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| ||||||||||||    
T  3160445 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataaca 3160374  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 2889044 - 2889092
Alignment:
Q  215 taaacaagagaattgattttctataagatgagatacagcagccatacct 263  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||||    
T  2889044 taaacaagagatgtgattttctataagatgggagacagcagccatacct 2889092  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 3145818 - 3145770
Alignment:
Q  215 taaacaagagaattgattttctataagatgagatacagcagccatacct 263  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||||    
T  3145818 taaacaagagatgtgattttctataagatgggagacagcagccatacct 3145770  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 43313384 - 43313475
Alignment:
Q  340 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 432  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  43313384 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 43313475  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 34743946 - 34743855
Alignment:
Q  340 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 432  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  34743946 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 34743855  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 21531757 - 21531666
Alignment:
Q  340 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 432  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  21531757 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 21531666  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 35167698 - 35167607
Alignment:
Q  340 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 432  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  35167698 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 35167607  T

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