View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_low_10 (Length: 319)
Name: NF8852_low_10
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_low_10 |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 55669401 - 55669701
Alignment:
| Q |
13 |
atggacatcatattcattgttgccatattacttttatatagtacagattacatcataagaatcaggaatcaagcaagcattatagctatagataaaagaa |
112 |
Q |
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| T |
55669401 |
atggacatcatattcattgttgccatattacttttatatagtacaaattacatcataagaatcaggaatcaagcaagcattatagctatagataaaagaa |
55669500 |
T |
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| Q |
113 |
agtagtaccttagttctagctgagtatgtccctctggcaaataaaccagatggtgttgtctcttctggcatttcatgcgtgtaaggctctgcttgagggc |
212 |
Q |
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| T |
55669501 |
agtagtaccttagttctagctgagtatgtccctctggcaaataaaccagatggtgttgtctcttctggcatttcatgcgtgtaaggctctgcttgagggc |
55669600 |
T |
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| Q |
213 |
tgaatgttccaatcatctctttagtgctgtcaactgcaacaaacctcagcaataagatcactataaacttaagggtcttgctaaccattgccctgagggc |
312 |
Q |
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| T |
55669601 |
tgaatgttccaatcatctctttagtgctgtcaactgcaacaaacctcagcaataagatcactataaacttaagggtcttgctaaccattgccctgagggc |
55669700 |
T |
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| Q |
313 |
a |
313 |
Q |
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| T |
55669701 |
a |
55669701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 9214583 - 9214721
Alignment:
| Q |
118 |
taccttagttctagctgagtatgtccctctggcaaataaaccagatggtgttgtctcttctggcatttcatgcgtgtaaggctctgcttgagggctgaat |
217 |
Q |
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| T |
9214583 |
taccttacttctagctgaatatgcccctctagcaaacatcccagatggtgttgtctcttcaggcatctcatgagtgtaagtctcagtttgaggactgaag |
9214682 |
T |
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| Q |
218 |
gttccaatcatctctttagtgctgtcaactgcaacaaac |
256 |
Q |
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| T |
9214683 |
gttccaatcatttctttactgctatcaactgtaacaaac |
9214721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 37445169 - 37445230
Alignment:
| Q |
173 |
tcttctggcatttcatgcgtgtaaggctctgcttgagggctgaatgttccaatcatctcttt |
234 |
Q |
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| T |
37445169 |
tcttctggcatctcatgtgtgtaaggctctggttgagggctgaaagttccaagcatctcttt |
37445230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 27209880 - 27209848
Alignment:
| Q |
284 |
agggtcttgctaaccattgccctgagggcaatg |
316 |
Q |
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| T |
27209880 |
agggtcttgctaaccattgccctgagggcaatg |
27209848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 105019 - 104984
Alignment:
| Q |
284 |
agggtcttgctaaccattgccctgagggcaatgatt |
319 |
Q |
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| T |
105019 |
agggtcttgctaaccattgccctaagggcaatgatt |
104984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 16315695 - 16315662
Alignment:
| Q |
283 |
aagggtcttgctaaccattgccctgagggcaatg |
316 |
Q |
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| T |
16315695 |
aagggtcttgctaaccattgccctcagggcaatg |
16315662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 39567852 - 39567885
Alignment:
| Q |
286 |
ggtcttgctaaccattgccctgagggcaatgatt |
319 |
Q |
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| T |
39567852 |
ggtcttgctaaccattgccctcagggcaatgatt |
39567885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 26672735 - 26672769
Alignment:
| Q |
282 |
taagggtcttgctaaccattgccctgagggcaatg |
316 |
Q |
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| T |
26672735 |
taagggtcttgctaatcattgccctgagggcaatg |
26672769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 16492182 - 16492148
Alignment:
| Q |
285 |
gggtcttgctaaccattgccctgagggcaatgatt |
319 |
Q |
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| T |
16492182 |
gggtcttgctaaccattgcccttagggcaatgatt |
16492148 |
T |
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