View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_low_12 (Length: 260)
Name: NF8852_low_12
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 52968221 - 52968445
Alignment:
| Q |
23 |
tgcagatcattcaaacttgtgaaattatattgatggttatatacaagtgttaaactaaaaattatagaaaatgttggttgttaaaattaattctattaaa |
122 |
Q |
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| T |
52968221 |
tgcagatcattcaaacttgtgaaatt-----gatggttatatacaagtgttaaactaaaaattatagaaaatgttggttgttaaaattaattctattaaa |
52968315 |
T |
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| Q |
123 |
caaatgaaatat----atattgtgatcaagtttagatcctggttctggttagcctttcatggaagttctttttaattactgtccattataatgtagctta |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52968316 |
caaatgaaatatatatatattgtgatcaagtttagatcctggttctggttagcctttcatggaagttctatttaattactgtccattataatgtagctta |
52968415 |
T |
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| Q |
219 |
gactgatgcaatgtactattatttgagtat |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52968416 |
gactgatgcaatgtactattatttgagtat |
52968445 |
T |
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