View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_low_13 (Length: 258)
Name: NF8852_low_13
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 5399305 - 5399519
Alignment:
| Q |
27 |
acacaacaagaaaaaatcaaaataacacatcacataccttgagataaagatcgaccaacttgtaaaaaacatcatggttgaccaaccttccattcaacga |
126 |
Q |
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| T |
5399305 |
acacaacaagaaaaaatcaaaataacacgtcacataccttgagataaagatcgaccaacttgtacaaaacatcatggttgaccaaccttccattcaacga |
5399404 |
T |
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| Q |
127 |
acaaacaaccatttgaaaatctctcagctgcatttccacaatgaaatccaaaacactatcatcaacatcatcgttttcccaaatcaatgcttcaatacat |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5399405 |
acaaacaaccatttgaaaatctctcagctgcatttccacaatgaaatccaaaacactatcatcaacatcatcgttttcccaaatcaatgcttcaagacat |
5399504 |
T |
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| Q |
227 |
ctactaccaagagac |
241 |
Q |
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||||||||||||||| |
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| T |
5399505 |
ctactaccaagagac |
5399519 |
T |
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