View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_low_17 (Length: 221)
Name: NF8852_low_17
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 33397911 - 33397715
Alignment:
| Q |
18 |
ttgagaacagtaatcattacttagagactctatcccttgtgtccaaacaactactcgacgtaacaaaccgttctgtgcattccgtcacattaatctacaa |
117 |
Q |
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| T |
33397911 |
ttgagaaccgtaatcattacttagagactctatcccttgtgtccaaacaactactcgacgtaacaaaccgttctgtgcattccgtcacattaatctacaa |
33397812 |
T |
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| Q |
118 |
tccatcatccttctctcgtctcttccaaaggttcccaaatcttacttcacttgacctctcgtgcttccgcggtgacacaaacattcttctcactcga |
214 |
Q |
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| T |
33397811 |
tccatcatccttctctcgtctcttccaaaggttcccaaatcttacttcacttgacctctcgtgcttccgcggtgacacaaacattcttctctctcga |
33397715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 33707742 - 33707864
Alignment:
| Q |
37 |
cttagagactctatcccttgtgtccaaacaactactcgacgtaacaaaccgttctgtgcattccgtcacattaatctacaatccatcatccttctctcgt |
136 |
Q |
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| T |
33707742 |
cttagagactctatcccttgtatccaaacaattactctccgtcaccaacagttctatatattccttgagattaatatacaatacattaccactctctcgc |
33707841 |
T |
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| Q |
137 |
ctcttccaaaggttcccaaatct |
159 |
Q |
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| T |
33707842 |
ctcttccaaaggttcccaaatct |
33707864 |
T |
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