View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8852_low_2 (Length: 513)
Name: NF8852_low_2
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8852_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 2 - 495
Target Start/End: Complemental strand, 55381511 - 55381016
Alignment:
| Q |
2 |
cctttacattggttccctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaataccaaccagagcttttaaaccactcccac |
101 |
Q |
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| T |
55381511 |
cctttacattggttccctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaagaccaaccagagcttttaaaccactcccac |
55381412 |
T |
|
| Q |
102 |
ttctccctttacattggttccctaatcgaaaggaagctcttcacgccatccaagttcacacctgaaaccacaggaccttctttataacggcaagacctca |
201 |
Q |
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| T |
55381411 |
ttctccctttacattggttccctaattgaaaggaagctcttcacgccatccaagttcacacctgaaaccacaggaccttctttataacggcaagacctca |
55381312 |
T |
|
| Q |
202 |
aacacaattactataaccacccaaataaagcaaacatcatgaatatttttccagaactccatcatccggttattatgacaaaaccagaccagtaccgtcc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55381311 |
aacacaattactataaccacccaaataaagcaaacatcatgaatatttttccagaactccatcatccggttattatgacgaaaccagaccagtaccgtcc |
55381212 |
T |
|
| Q |
302 |
actagtggaaaaaacacattccacaatgagctttcacagcagagattcgctgctt--ccacacaatgcaacaatgcggtgagggagtcacgtatgctcac |
399 |
Q |
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| T |
55381211 |
actagtggaaaaaacacattccacaatgagctttcacagcagagattcgctgctttgccacacaatgcaacaatgcggtgagggagtcacgtatgctcac |
55381112 |
T |
|
| Q |
400 |
gagtcagccgccgctgatcgttcacttacgccatcatgtcatttgccatcctggctcttgcttcactacataccctcactcttcctccgtttgtcg |
495 |
Q |
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| T |
55381111 |
gagtcagccgccgctgatcgttcacttacgccatcatgtcatttgccatcctggctcttgcttcactacataccctcactcttcctccgtttgtcg |
55381016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 55381601 - 55381494
Alignment:
| Q |
17 |
cctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaataccaaccagagcttttaaaccactcccacttctccctttacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55381601 |
cctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaataccaaccagagcttttaaaccactcccacttctccctttacatt |
55381502 |
T |
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| Q |
117 |
ggttccct |
124 |
Q |
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|||||||| |
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| T |
55381501 |
ggttccct |
55381494 |
T |
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