View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8852_low_6 (Length: 369)

Name: NF8852_low_6
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8852_low_6
NF8852_low_6
[»] chr5 (27 HSPs)
chr5 (141-216)||(29695012-29695087)
chr5 (154-224)||(23118053-23118123)
chr5 (142-219)||(8544979-8545056)
chr5 (143-216)||(11637563-11637636)
chr5 (146-207)||(37073762-37073823)
chr5 (143-214)||(39914900-39914970)
chr5 (142-216)||(40715939-40716013)
chr5 (143-216)||(5107236-5107309)
chr5 (150-207)||(41630110-41630167)
chr5 (143-214)||(26409252-26409323)
chr5 (141-219)||(17672289-17672367)
chr5 (142-208)||(20125032-20125096)
chr5 (141-191)||(26655486-26655536)
chr5 (141-191)||(26927071-26927121)
chr5 (170-215)||(8682412-8682457)
chr5 (143-216)||(32200438-32200511)
chr5 (142-203)||(37054259-37054320)
chr5 (166-219)||(39610355-39610408)
chr5 (142-219)||(40027754-40027831)
chr5 (142-203)||(41266396-41266457)
chr5 (142-194)||(3052298-3052350)
chr5 (153-221)||(5485178-5485246)
chr5 (179-219)||(11318223-11318263)
chr5 (142-214)||(11647196-11647268)
chr5 (141-213)||(11720894-11720965)
chr5 (142-218)||(13864339-13864415)
chr5 (150-190)||(20074575-20074615)
[»] chr7 (28 HSPs)
chr7 (141-216)||(35142138-35142213)
chr7 (142-216)||(7388029-7388103)
chr7 (142-213)||(21105603-21105674)
chr7 (141-191)||(42227794-42227844)
chr7 (170-218)||(21580811-21580859)
chr7 (141-213)||(23221392-23221464)
chr7 (170-213)||(26713112-26713154)
chr7 (141-208)||(40187625-40187692)
chr7 (141-219)||(7994873-7994951)
chr7 (141-191)||(27833390-27833440)
chr7 (153-215)||(39926539-39926601)
chr7 (141-207)||(45425459-45425525)
chr7 (142-208)||(48837872-48837938)
chr7 (142-219)||(429168-429245)
chr7 (146-191)||(7908615-7908660)
chr7 (167-208)||(8903657-8903698)
chr7 (142-219)||(24099226-24099302)
chr7 (142-215)||(28200375-28200448)
chr7 (142-191)||(30397091-30397140)
chr7 (142-219)||(32315217-32315294)
chr7 (180-216)||(8901368-8901404)
chr7 (142-198)||(18773746-18773802)
chr7 (152-200)||(21411532-21411579)
chr7 (144-216)||(24225973-24226045)
chr7 (176-216)||(26825421-26825461)
chr7 (158-214)||(34000261-34000317)
chr7 (176-216)||(42829258-42829298)
chr7 (148-220)||(44651598-44651670)
[»] chr3 (18 HSPs)
chr3 (142-216)||(7464481-7464555)
chr3 (141-214)||(7651185-7651258)
chr3 (142-219)||(47039421-47039498)
chr3 (142-198)||(48657807-48657863)
chr3 (166-214)||(22462311-22462359)
chr3 (142-216)||(7827505-7827579)
chr3 (142-216)||(7829893-7829967)
chr3 (165-207)||(25485481-25485523)
chr3 (141-203)||(48209200-48209262)
chr3 (141-195)||(52453246-52453300)
chr3 (143-216)||(34899094-34899167)
chr3 (151-216)||(46226077-46226141)
chr3 (143-208)||(52119381-52119446)
chr3 (176-208)||(9251421-9251453)
chr3 (142-214)||(10922298-10922370)
chr3 (176-216)||(32753825-32753865)
chr3 (141-213)||(38130948-38131020)
chr3 (176-208)||(43679811-43679843)
[»] chr2 (33 HSPs)
chr2 (142-218)||(31815877-31815953)
chr2 (176-219)||(1238156-1238199)
chr2 (141-213)||(31397778-31397850)
chr2 (141-208)||(5168568-5168635)
chr2 (141-208)||(9547398-9547465)
chr2 (142-191)||(4238781-4238830)
chr2 (158-219)||(9519720-9519781)
chr2 (146-215)||(40967365-40967434)
chr2 (142-218)||(20565065-20565141)
chr2 (141-213)||(29544627-29544699)
chr2 (142-189)||(24581007-24581054)
chr2 (141-208)||(25395431-25395498)
chr2 (151-214)||(28202296-28202359)
chr2 (142-213)||(36264469-36264540)
chr2 (142-216)||(2256968-2257042)
chr2 (142-216)||(14735883-14735957)
chr2 (176-214)||(20239342-20239380)
chr2 (142-216)||(20455888-20455962)
chr2 (142-216)||(27412826-27412900)
chr2 (142-216)||(29798507-29798581)
chr2 (142-208)||(29809331-29809397)
chr2 (142-216)||(31837926-31838000)
chr2 (176-218)||(34242817-34242859)
chr2 (150-216)||(40295456-40295522)
chr2 (158-216)||(44026605-44026663)
chr2 (142-207)||(27935062-27935127)
chr2 (142-219)||(30045447-30045524)
chr2 (142-219)||(30050610-30050687)
chr2 (142-219)||(30141654-30141731)
chr2 (153-214)||(37320518-37320579)
chr2 (142-207)||(39555426-39555490)
chr2 (179-219)||(7302168-7302208)
chr2 (176-216)||(27244654-27244694)
[»] chr4 (33 HSPs)
chr4 (142-213)||(19908692-19908763)
chr4 (147-191)||(36479013-36479057)
chr4 (142-208)||(37930837-37930903)
chr4 (158-216)||(39842018-39842076)
chr4 (142-216)||(42344608-42344682)
chr4 (153-218)||(6459925-6459990)
chr4 (176-216)||(13276126-13276166)
chr4 (151-207)||(41536928-41536984)
chr4 (148-216)||(51436602-51436670)
chr4 (176-216)||(56309324-56309364)
chr4 (156-219)||(874453-874516)
chr4 (145-216)||(14202472-14202543)
chr4 (176-219)||(17134119-17134162)
chr4 (142-213)||(30135140-30135211)
chr4 (142-189)||(34960147-34960194)
chr4 (145-216)||(35021460-35021531)
chr4 (141-216)||(43034331-43034406)
chr4 (142-216)||(24664981-24665055)
chr4 (176-214)||(29910460-29910498)
chr4 (142-208)||(48171886-48171952)
chr4 (158-208)||(56096209-56096259)
chr4 (142-215)||(35823374-35823446)
chr4 (143-208)||(41520959-41521024)
chr4 (142-203)||(46434750-46434811)
chr4 (170-215)||(49952587-49952632)
chr4 (142-219)||(54500563-54500640)
chr4 (142-199)||(54677239-54677296)
chr4 (150-214)||(7371546-7371610)
chr4 (141-221)||(9946419-9946499)
chr4 (176-216)||(12712042-12712082)
chr4 (170-218)||(14197449-14197497)
chr4 (151-191)||(29568608-29568648)
chr4 (151-207)||(34595935-34595991)
[»] chr1 (30 HSPs)
chr1 (142-213)||(33153870-33153941)
chr1 (145-216)||(37705122-37705193)
chr1 (142-214)||(10292935-10293007)
chr1 (145-216)||(2613719-2613790)
chr1 (141-216)||(27533240-27533315)
chr1 (141-219)||(3777712-3777790)
chr1 (144-198)||(13401612-13401666)
chr1 (142-219)||(14768800-14768878)
chr1 (142-208)||(41973260-41973326)
chr1 (143-216)||(3431327-3431400)
chr1 (142-207)||(22388165-22388230)
chr1 (176-216)||(2884472-2884512)
chr1 (148-208)||(18056712-18056772)
chr1 (144-215)||(12212293-12212364)
chr1 (141-216)||(17139506-17139581)
chr1 (165-216)||(30678826-30678877)
chr1 (141-219)||(21041338-21041416)
chr1 (177-207)||(28341187-28341217)
chr1 (142-208)||(29042542-29042608)
chr1 (142-219)||(15382809-15382886)
chr1 (142-215)||(16967184-16967257)
chr1 (142-203)||(17917128-17917189)
chr1 (179-216)||(18091200-18091237)
chr1 (176-216)||(16033474-16033514)
chr1 (176-216)||(18521244-18521284)
chr1 (142-214)||(32433085-32433157)
chr1 (141-213)||(36467014-36467086)
chr1 (142-198)||(41974776-41974832)
chr1 (141-225)||(49130217-49130300)
chr1 (176-216)||(49222813-49222853)
[»] chr8 (21 HSPs)
chr8 (143-216)||(21557430-21557503)
chr8 (143-213)||(23159441-23159511)
chr8 (143-216)||(11708983-11709056)
chr8 (141-221)||(6471503-6471583)
chr8 (142-218)||(12938917-12938993)
chr8 (167-215)||(13272537-13272585)
chr8 (152-208)||(18959154-18959210)
chr8 (142-214)||(34420852-34420924)
chr8 (164-215)||(3456833-3456884)
chr8 (141-216)||(13357430-13357505)
chr8 (142-216)||(9241012-9241086)
chr8 (152-214)||(16843523-16843585)
chr8 (141-215)||(30071505-30071579)
chr8 (142-215)||(3650518-3650591)
chr8 (151-216)||(10732774-10732839)
chr8 (142-219)||(12133527-12133604)
chr8 (142-219)||(18422443-18422520)
chr8 (143-208)||(26799189-26799254)
chr8 (176-216)||(8837917-8837957)
chr8 (148-208)||(24429804-24429864)
chr8 (142-190)||(44632175-44632223)
[»] chr6 (20 HSPs)
chr6 (142-215)||(8629686-8629759)
chr6 (142-203)||(24623307-24623368)
chr6 (141-216)||(5632131-5632206)
chr6 (143-218)||(32524411-32524486)
chr6 (142-215)||(4826288-4826361)
chr6 (141-218)||(10278448-10278525)
chr6 (142-203)||(12232172-12232233)
chr6 (151-215)||(404161-404225)
chr6 (167-219)||(28758815-28758867)
chr6 (176-215)||(2426719-2426758)
chr6 (141-208)||(2445304-2445371)
chr6 (176-219)||(4553730-4553773)
chr6 (142-189)||(15169955-15170002)
chr6 (142-189)||(15178727-15178774)
chr6 (153-216)||(19277571-19277634)
chr6 (142-216)||(788863-788937)
chr6 (145-215)||(29069481-29069551)
chr6 (142-207)||(8569715-8569780)
chr6 (143-216)||(16390426-16390499)
chr6 (167-208)||(24212554-24212595)
[»] scaffold0204 (1 HSPs)
scaffold0204 (155-213)||(16151-16209)
[»] scaffold0021 (1 HSPs)
scaffold0021 (141-213)||(161141-161213)
[»] scaffold0008 (1 HSPs)
scaffold0008 (143-216)||(119566-119639)
[»] scaffold1160 (1 HSPs)
scaffold1160 (142-207)||(1702-1767)
[»] scaffold0017 (1 HSPs)
scaffold0017 (170-219)||(35946-35995)
[»] scaffold0016 (1 HSPs)
scaffold0016 (176-216)||(99034-99074)


Alignment Details
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 29695087 - 29695012
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  29695087 ggtggtggtcggggtttgaaccacgaaccttacatatattatgcattgtccatatcaactgagttaaggtcacgag 29695012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 23118053 - 23118123
Alignment:
Q  154 gttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacctaat 224  Q
    ||||||||| | ||| ||||| |||||||||||||||| |||||| ||||||||| |||||||||| ||||    
T  23118053 gttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacgagaacataat 23118123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 8544979 - 8545056
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||| ||||||||  || || || || |||||||||||||||| |||||| ||||||||| ||||||||||    
T  8544979 gtggtggtcggagttcgaactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaac 8545056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 11637563 - 11637636
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||||| ||||| || || || ||||||||||||| || ||| ||||||||| |||||||    
T  11637563 tggtggtcggggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgag 11637636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 37073762 - 37073823
Alignment:
Q  146 tggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| |||| || ||||||||||||    
T  37073762 tggtcggggttcgaaccccgaaccttacatatattatgcatagtccataccaattgagttaa 37073823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 39914970 - 39914900
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||||||||||||| || || || || |||||||||||||||| || ||||||||||||| |||||    
T  39914970 tggtggtcggggttcgaacc-cggaccttgcatatattatgcattgtccttaccaattgagttaagctcacg 39914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 40715939 - 40716013
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| ||||||| ||||| || || || || |||||||||||||||| ||||||||||| |||| |||||||    
T  40715939 gtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccatatcaattgagctaagctcacgag 40716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 5107236 - 5107309
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||||| || || || |||||||||||| | | || ||| ||||||||| |||||||    
T  5107236 tggtggtcggggttcgaacctcggaccttgcatatattatgcattattcataccaactgagttaagctcacgag 5107309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 41630110 - 41630167
Alignment:
Q  150 cggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    ||||||| ||| | ||||| || || ||||||||||||||||||||||||||||||||    
T  41630110 cggggtttgaatcccgaaccttgcatatattatgcattgtccctatcaattgagttaa 41630167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 26409323 - 26409252
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||| ||||||||||||| || || ||||| |||||||||||||||| || ||| |||| |||| |||||    
T  26409323 tggtgggcggggttcgaaccccggaccttacatatattatgcattgtccataccaactgagctaagctcacg 26409252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 17672289 - 17672367
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||| ||| | |||||||| ||||| ||| | ||||||||||| |||| |||||| |||| |||| ||||||||||    
T  17672289 ggtggtgatcgagattcgaaccccgaaccttatatatattatgcatcgtccttatcaactgagctaagctcacgagaac 17672367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 20125096 - 20125032
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||||||| ||| ||||| ||||| || || |||||||||||||||| ||||||||||||||||    
T  20125096 gtggtggtcggagtttgaacc-cgaaccttgcatatattatgcattgtcc-tatcaattgagttaag 20125032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 26655536 - 26655486
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||||||    
T  26655536 ggtggtggccggggttcgaaccccggaccttacatatattatgcattgtcc 26655486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 26927121 - 26927071
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||||||    
T  26927121 ggtggtggccggggttcgaaccccggaccttacatatattatgcattgtcc 26927071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 8682412 - 8682457
Alignment:
Q  170 ttacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||| |||||||||||||||||||  || ||||||||||||||||    
T  8682412 ttacatatattatgcattgtccctactaactgagttaaggtcacga 8682457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 32200438 - 32200511
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||| | ||||| || || || || |||||||||||||||||| |||| |||| |||| |||||||    
T  32200438 tggtggtcggggcttgaaccccggaccttgcatatattatgcattgtccctgtcaactgagctaagctcacgag 32200511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 37054259 - 37054320
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    ||||||||||| ||| ||||| ||||| ||| | ||||||||||||||||||| ||| ||||    
T  37054259 gtggtggtcggagtttgaaccccgaaccttatatatattatgcattgtccctaccaactgag 37054320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 39610355 - 39610408
Alignment:
Q  166 aacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||| || |||||||||||||||| |||||| |||| |||| ||||||||||    
T  39610355 aacattgcatatattatgcattgtccatatcaactgagctaagctcacgagaac 39610408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 40027754 - 40027831
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||| |||| |||| |||| ||||  ||||| |||||||||||||||| |  ||| ||||||||| ||||||||||    
T  40027754 gtggtgatcggagttcaaaccccgaattttacatatattatgcattgtccatgccaactgagttaagctcacgagaac 40027831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 41266457 - 41266396
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    ||||||||||||||  ||||| ||||| ||||| ||||||||  |||||| |||||||||||    
T  41266457 gtggtggtcggggtgtgaaccccgaaccttacatatattatgttttgtccttatcaattgag 41266396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 3052350 - 3052298
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcccta 194  Q
    |||||||||| |||| ||||||||||| || || ||||||| |||||||||||    
T  3052350 gtggtggtcgaggtttgaacctcgaaccttgcatatattatacattgtcccta 3052298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 5485246 - 5485178
Alignment:
Q  153 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacct 221  Q
    |||| ||||| || ||||| || ||||||||||||||||||| ||| |||| |||| ||||||| ||||    
T  5485246 ggttagaaccccggacattgcatatattatgcattgtccctaccaactgagctaagctcacgaggacct 5485178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 11318223 - 11318263
Alignment:
Q  179 ttatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||| ||| |||||||||||||||| ||||||||||    
T  11318223 ttatgcattatccttatcaattgagttaagctcacgagaac 11318263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 11647268 - 11647196
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||||||| || |||||||| | ||| || || |||||||||||||||| || ||| ||||||||| |||||    
T  11647268 gtggtggtcaggattcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagttaagttcacg 11647196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 11720965 - 11720894
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||| ||||||| ||||| ||| | || || ||||||||||||||||||| ||| ||||||||| ||||    
T  11720965 ggtggtggccggggtttgaaccccgacc-ttgcatatattatgcattgtccctaccaactgagttaagctcac 11720894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 13864415 - 13864339
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    ||||||||||||||| ||||| || || || || |||||||| ||||| | || ||| ||||||||| |||||||||    
T  13864415 gtggtggtcggggtttgaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctcacgagaa 13864339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 20074615 - 20074575
Alignment:
Q  150 cggggttcgaacctcgaacattacagatattatgcattgtc 190  Q
    ||||||||||| |||| |||||||| |||||||||||||||    
T  20074615 cggggttcgaaactcggacattacatatattatgcattgtc 20074575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 35142138 - 35142213
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||||||||| ||| || || |||||||||||||||| |||||| |||| |||| |||||||    
T  35142138 ggtggtggtcggggttcgaacctcaaactttgcatatattatgcattgtccatatcaactgagctaagctcacgag 35142213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 7388029 - 7388103
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||| ||| | ||||| ||||| ||||||||||||||||| | ||| ||||||||| |||||||    
T  7388029 gtggtggtcggggtttgaatcccgaaccttacatatattatgcattgtcccaaccaactgagttaagctcacgag 7388103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 21105674 - 21105603
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    ||||||||||||||||||||||||||| || || |||||||||||| ||| || ||| |||| |||| ||||    
T  21105674 gtggtggtcggggttcgaacctcgaaccttgcatatattatgcattttccataccaactgagctaagctcac 21105603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 42227794 - 42227844
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    |||||||||||| ||| ||||||||||| ||||| ||||||||||||||||    
T  42227794 ggtggtggtcggagtttgaacctcgaaccttacatatattatgcattgtcc 42227844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 21580859 - 21580811
Alignment:
Q  170 ttacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    ||||| |||||||||||||||| |||||||||||||||| | |||||||    
T  21580859 ttacatatattatgcattgtccatatcaattgagttaagcttacgagaa 21580811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 23221464 - 23221392
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    ||||||||| || ||| ||||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||| ||||    
T  23221464 ggtggtggttggagtttgaaccacgaaccttacatatattatgcattgtctctaccaactgagttaagctcac 23221392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 26713112 - 26713154
Alignment:
Q  170 ttacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  26713112 ttacatatattatgcattgtcc-tatcaattgagttaaggtcac 26713154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 40187625 - 40187692
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||| |||||||| ||||| |  || ||||| ||||||||||||||||||| ||| |||||||||    
T  40187625 ggtggtgttcggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaag 40187692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 7994873 - 7994951
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||||||||||||| ||||| |  || ||||| ||||||||  ||||||||| ||| ||||||| | ||||||||||    
T  7994873 ggtggtggtcggggtttgaaccccagaccttacatatattatgttttgtccctaccaactgagttatgctcacgagaac 7994951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 27833390 - 27833440
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    |||||||||||||||| ||||| || || ||||| ||||||||||||||||    
T  27833390 ggtggtggtcggggtttgaaccccggaccttacatatattatgcattgtcc 27833440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 39926539 - 39926601
Alignment:
Q  153 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    |||| ||||| |||||||| || |||||||||||||||| |||||| |||| |||| ||||||    
T  39926539 ggtttgaaccccgaacattgcatatattatgcattgtccttatcaactgagctaagctcacga 39926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 45425525 - 45425459
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    |||||||| |||| |||||||| ||||| || || |||||||||||||||  |||||| ||||||||    
T  45425525 ggtggtggccgggattcgaaccccgaaccttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 48837938 - 48837872
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||| ||||||||||||| | ||| || || |||||||||||| ||| || |||||||||||||    
T  48837938 gtggtggccggggttcgaaccccaaactttgcatatattatgcattatccataccaattgagttaag 48837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 429168 - 429245
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||||||||| ||  | ||| || || |||||||| ||| ||| |||||| ||||||||| ||||||||||    
T  429168 gtggtggtcggggttcggactccaaaccttgcatatattatgtattatccatatcaactgagttaagctcacgagaac 429245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 7908660 - 7908615
Alignment:
Q  146 tggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    ||||||||||||||||| ||||| ||||| || |||||||||||||    
T  7908660 tggtcggggttcgaaccccgaaccttacatattttatgcattgtcc 7908615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 8903657 - 8903698
Alignment:
Q  167 acattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||| |||| ||||||||||| ||||||||||||||||    
T  8903657 acattacatatatcatgcattgtccttatcaattgagttaag 8903698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 24099226 - 24099302
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||||||||| ||| |||| ||||| ||||| ||||||||||||||   ||||||||||| | || ||||||||||    
T  24099226 gtggtggtcggg-ttcaaaccccgaaccttacatatattatgcattgtttatatcaattgagcttagttcacgagaac 24099302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 28200375 - 28200448
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||||||| ||| ||||||||||  || || |||||||| ||||| |||| ||| ||||||||| ||||||    
T  28200375 gtggtggtcggagtttgaacctcgaattttgcatatattatgtattgttcctaccaactgagttaagctcacga 28200448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 30397140 - 30397091
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    |||||||||||||||| |||| ||||| ||||| || |||||||||||||    
T  30397140 gtggtggtcggggttcaaaccccgaaccttacatattttatgcattgtcc 30397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 32315294 - 32315217
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||| |||||||||||  |||| || || |||||||| | ||||| |||||| ||||||||| ||||| ||||    
T  32315294 gtggtggtcagggttcgaaccctgaaccttgcatatattatgtaatgtccttatcaactgagttaagctcacgtgaac 32315217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 8901404 - 8901368
Alignment:
Q  180 tatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||| |||||||||||||||| |||||||    
T  8901404 tatgcattgtccatatcaattgagttaagttcacgag 8901368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 18773746 - 18773802
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaa 198  Q
    ||||||||||||||| ||||| || || ||||| || ||||||||||||| ||||||    
T  18773746 gtggtggtcggggtttgaaccccggaccttacatattttatgcattgtccatatcaa 18773802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 21411579 - 21411532
Alignment:
Q  152 gggttcgaacctcgaacattacagatattatgcattgtccctatcaatt 200  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  21411579 gggttcgaacc-cgaactttacatatattatgcattgtccctaccaatt 21411532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 24225973 - 24226045
Alignment:
Q  144 ggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||| ||||||||||||| || ||||| || ||||||||||||| ||  || |||| |||| |||||||    
T  24225973 ggtggtcgaggttcgaacctcggaccttacatattttatgcattgtccatacgaactgagctaagttcacgag 24226045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 26825421 - 26825461
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| ||||||||||| |||| |||||||    
T  26825421 atattatgcattgtccatatcaattgaggtaagctcacgag 26825461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 34000317 - 34000261
Alignment:
Q  158 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||| ||||| ||||| |||||||||||| ||| |||||| ||||||||| |||||    
T  34000317 gaaccccgaaccttacatatattatgcattatccttatcaactgagttaagctcacg 34000261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 42829258 - 42829298
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  42829258 atattatgcattgtccctatcaactgagtcaagctcacgag 42829298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 44651670 - 44651598
Alignment:
Q  148 gtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacc 220  Q
    ||||| ||| |||| |||||| || || |||||||||||||||  ||||||||||| || | |||||||||||    
T  44651670 gtcggagtttgaacttcgaaccttgcatatattatgcattgtcattatcaattgagctatgctcacgagaacc 44651598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 7464481 - 7464555
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||| ||||| || || ||||| ||||||||||||||||||| ||| ||||||||| |||||||    
T  7464481 gtggtggtcggggtttgaaccccggaccttacatatattatgcattgtccctaccaactgagttaagctcacgag 7464555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 7651258 - 7651185
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||||| ||| ||||| ||||| ||| | ||| ||||||||||||||||||| ||||||||| |||||    
T  7651258 ggtggtggtcggcgtttgaaccccgaaccttatatatactatgcattgtccctatcaactgagttaagctcacg 7651185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 47039498 - 47039421
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||||||||| |||||||| ||||| || || |||||||||||||||| |||||  ||||||||| ||||| ||||    
T  47039498 gtggtggtcgggattcgaaccccgaactttgcatatattatgcattgtccttatcatctgagttaagctcacgggaac 47039421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 48657807 - 48657863
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaa 198  Q
    ||||||||||||||||||||| ||||  ||||| |||||||| ||||||||||||||    
T  48657807 gtggtggtcggggttcgaaccccgaatcttacatatattatggattgtccctatcaa 48657863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 22462359 - 22462311
Alignment:
Q  166 aacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  22462359 aacattacatatattatgcattgtccttatcaactgagttaagctcacg 22462311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 7827579 - 7827505
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||| |||||||  |  || ||||| |||||||||||||||| |||||| ||||||||  |||||||    
T  7827579 gtggtggtcgggtttcgaactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgag 7827505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 7829967 - 7829893
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||  ||||||| ||  || ||||| |||||||||||||||| |||||| ||||||||  |||||||    
T  7829967 gtggtggtcggatttcgaacttcagaccttacatatattatgcattgtccatatcaactgagttaaactcacgag 7829893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 25485481 - 25485523
Alignment:
Q  165 gaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    |||||||||| |||||||||||||||  |||||||||||||||    
T  25485481 gaacattacatatattatgcattgtctatatcaattgagttaa 25485523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 48209200 - 48209262
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    |||||||||||||||| |||||  |||| ||| | |||||||| |||||||||||||| ||||    
T  48209200 ggtggtggtcggggtttgaaccctgaaccttatatatattatgtattgtccctatcaactgag 48209262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 52453246 - 52453300
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctat 195  Q
    |||||||| || |||| ||||||||||| || || ||||||||||||||||||||    
T  52453246 ggtggtggacgaggtttgaacctcgaactttgcatatattatgcattgtccctat 52453300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 34899167 - 34899094
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||| ||||| || || || || |||||||||||||||||||  || |||| |||| |||||||    
T  34899167 tggtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctacgaactgagctaagatcacgag 34899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 46226077 - 46226141
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||| || || || || ||||||||||||||||||| ||||||||||||  |||||||    
T  46226077 ggggttcgaacc-cggaccttgcatatattatgcattgtccctaccaattgagttaaactcacgag 46226141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 52119446 - 52119381
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||| ||||||||||||| ||||| || || |||||||||||||||| || ||| |||| ||||    
T  52119446 tggtggccggggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaag 52119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 9251421 - 9251453
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaag 208  Q
    ||||||||||||||||||| |||||||||||||    
T  9251421 atattatgcattgtccctaccaattgagttaag 9251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 10922298 - 10922370
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||| ||||||||| ||||| || |  || || ||||||||||||||||||| ||| ||||||||| |||||    
T  10922298 gtggtagtcggggtttgaaccccggatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 32753865 - 32753825
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  32753865 atattatgcattgtccctatcaactgagtcaagctcacgag 32753825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 38130948 - 38131020
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||| ||||||| ||||| || || || || |||||||||||||||| || ||| ||||||||| ||||    
T  38130948 ggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagttaagctcac 38131020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 43679843 - 43679811
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaag 208  Q
    |||||||||||||||| ||||||||||||||||    
T  43679843 atattatgcattgtccttatcaattgagttaag 43679811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 31815877 - 31815953
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    ||||||||||||||| ||||| || || || || ||||||||||||||||||| ||| ||||||||| |||||||||    
T  31815877 gtggtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagttaagctcacgagaa 31815953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 1238199 - 1238156
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  1238199 atattatgcattgtccctatcaattgagttaagctcacgagaac 1238156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 31397778 - 31397850
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||| ||||||||||| |||| || ||||| || |||||||||||||||| |||||||| |||| ||||    
T  31397778 ggtggtggccggggttcgaatctcggaccttacatattttatgcattgtccctaccaattgagctaagctcac 31397850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 5168568 - 5168635
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||| ||||||||| ||||| ||||| || || |||||||||||| |||||||||| |||||||||    
T  5168568 ggtggtagtcggggtttgaaccccgaaccttgcatatattatgcattatccctatcaactgagttaag 5168635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 9547398 - 9547465
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||||||||||| ||||| | ||| || || |||||||||||||||| |||||| |||||||||    
T  9547398 ggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtccatatcaactgagttaag 9547465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 4238830 - 4238781
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  4238830 gtggtggtcggagttcgaaccccgaaccttacatatattatgcattgtcc 4238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 9519720 - 9519781
Alignment:
Q  158 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||| |||||| || || |||||||||||||||| ||||||||||| |||| ||||||||||    
T  9519720 gaacttcgaaccttgcatatattatgcattgtccatatcaattgagctaagctcacgagaac 9519781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 40967365 - 40967434
Alignment:
Q  146 tggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    |||||| |||| ||||||| ||| || || |||||||||||||||| |||||| ||||||||| ||||||    
T  40967365 tggtcgaggtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacga 40967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 20565065 - 20565141
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    |||||||| |||||| ||||| || || || || ||||||||||||||||||| ||| |||| |||| |||||||||    
T  20565065 gtggtggttggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagaa 20565141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 29544699 - 29544627
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||| ||||||| ||||| || || || || ||||||||||||||||||| |||||||| |||| ||||    
T  29544699 ggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccctaccaattgagctaagctcac 29544627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 24581007 - 24581054
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 189  Q
    ||||||||||||||| ||||||||||| || || ||||||||||||||    
T  24581007 gtggtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 25395431 - 25395498
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||||||||| || |||||| |||| || || |||||||||||||| |||| ||| |||||||||    
T  25395431 ggtggtggtcgggatttgaaccttgaaccttgcatatattatgcattgttcctaccaactgagttaag 25395498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 28202359 - 28202296
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||| |||| ||| || ||||| ||||||||||||||||||||||| |||| |||| |||||    
T  28202359 ggggtttgaacttcggaccttacatatattatgcattgtccctatcaactgagctaagctcacg 28202296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 36264469 - 36264540
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    ||||||||||||||| ||||| ||||| || || |||||||||||| ||| || ||||||| ||||| ||||    
T  36264469 gtggtggtcggggtttgaaccccgaactttgcatatattatgcattatccataccaattgaattaagctcac 36264540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 2257042 - 2256968
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| ||||||||||||| |  || || || |||||||||||||||| || ||| ||||||||| |||||||    
T  2257042 gtggtggccggggttcgaaccccagaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 2256968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 14735883 - 14735957
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| ||| ||| ||||||||||| ||||| || ||||||||||||| || ||||| || |||| |||||||    
T  14735883 gtggtggccggagtttgaacctcgaaccttacatattttatgcattgtccataccaattaagctaagctcacgag 14735957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 20239380 - 20239342
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  20239380 atattatgcattatccctatcaattgagttaagctcacg 20239342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 20455962 - 20455888
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| |||| |||||||| || || || || |||||||||||||||| || |||||||| |||| |||||||    
T  20455962 gtggtggccgggattcgaaccccggaccttgcatatattatgcattgtccataccaattgagctaagctcacgag 20455888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 27412826 - 27412900
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||| ||||  |  || ||||| ||||||||||||||| ||| ||| ||||||||| |||||||    
T  27412826 gtggtggtcggggtttgaacaacagaccttacatatattatgcattgtctctaccaactgagttaagctcacgag 27412900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 29798507 - 29798581
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||| |  || ||| | || ||||||||||||| || ||| ||||||||| |||||||    
T  29798507 gtggtggtcggggttcgaacccctgaccttaaatattttatgcattgtccataccaactgagttaagctcacgag 29798581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 29809397 - 29809331
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||| |||| |||||||| || || || || ||||||||||||||||||| ||| |||||||||    
T  29809397 gtggtggccgggattcgaaccccgtacctttcatatattatgcattgtccctaccaactgagttaag 29809331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 31837926 - 31838000
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||| |||| ||| | ||||| ||||| ||||||| |||| ||| || ||||||||||||| |||||||    
T  31837926 gtggtggtcgaggtttgaatcccgaaccttacatatattatacattatccataccaattgagttaagttcacgag 31838000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 34242859 - 34242817
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    |||||||||||||||||||||||||||| |||| ||| |||||    
T  34242859 atattatgcattgtccctatcaattgagctaagctcatgagaa 34242817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 40295456 - 40295522
Alignment:
Q  150 cggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| ||||||||||  || || | |||||||||||| | |||||||||||||||| |||||||    
T  40295456 cggggtttgaacctcgaatcttgcatacattatgcattgttcatatcaattgagttaagttcacgag 40295522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 44026663 - 44026605
Alignment:
Q  158 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||| ||||| ||||| ||||||||| |||||| || ||||||||||||| |||||||    
T  44026663 gaaccccgaaccttacatatattatgcgttgtccataccaattgagttaagctcacgag 44026605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 27935127 - 27935062
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    |||||||  ||||||||||||||| || || || ||||| ||||||||||||| ||| ||||||||    
T  27935127 gtggtggctggggttcgaacctcgtaccttgcatatattctgcattgtccctaccaactgagttaa 27935062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 30045524 - 30045447
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||| || |||| ||| ||||||| ||  | ||||||||||||||||||| |||||||| |||| |||| |||||    
T  30045524 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcaccagaac 30045447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 30050687 - 30050610
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||| || |||| ||| ||||||| ||  | ||||||||||||||||||| |||||||| |||| |||| |||||    
T  30050687 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcaccagaac 30050610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 30141731 - 30141654
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||| || |||| ||| ||||||| ||  | ||||||||||||||||||| |||||||| |||| |||| |||||    
T  30141731 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcaccagaac 30141654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 37320518 - 37320579
Alignment:
Q  153 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||||||||| || || |||||||||||||||  || ||| ||||||||| |||||    
T  37320518 ggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 39555490 - 39555426
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    |||||||||||||||||||||||  ||  |||| ||||||| |||| ||| |||||||||||||||    
T  39555490 gtggtggtcggggttcgaacctcataccatacatatattat-cattctccttatcaattgagttaa 39555426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 7302168 - 7302208
Alignment:
Q  179 ttatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||||||||||||||||| |||| |||| ||||||||||    
T  7302168 ttatgcattgtccctatcaactgagctaagttcacgagaac 7302208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 27244694 - 27244654
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||||| |||| |||| |||||||    
T  27244694 atattatgcattgtccctatcaactgagctaagctcacgag 27244654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 19908763 - 19908692
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||||||||||||||||||| || || || |||||||||||||||| || ||| ||||||||| ||||    
T  19908763 gtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctcac 19908692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 36479057 - 36479013
Alignment:
Q  147 ggtcggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  36479057 ggtcggggttcgaacctcgaaccttacatatattatgcattgtcc 36479013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 37930837 - 37930903
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||||||||||| |||||||  || || || |||||||||||||| |||| |||||||||||||    
T  37930837 gtggtggtcggggtttgaacctcagaccttgcatatattatgcattgtacctaccaattgagttaag 37930903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 39842018 - 39842076
Alignment:
Q  158 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| ||| ||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  39842018 gaacctcaaaccttacatatattatgcattgtccttatcaactgagttaagatcacgag 39842076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 42344608 - 42344682
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||  ||| |||||||| || || || ||||||| |||||| |||| |||||||||||||||||||||    
T  42344608 gtggtggtcgatgtttgaacctcggaccttgcatatattatacattgttcctaccaattgagttaaggtcacgag 42344682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 6459925 - 6459990
Alignment:
Q  153 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    |||||||||  || || ||||| |||||||||||||||| |||||| ||||||||| |||||||||    
T  6459925 ggttcgaactccggaccttacatatattatgcattgtccatatcaactgagttaagctcacgagaa 6459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 13276166 - 13276126
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  13276166 atattatgcattgtccctaccaattgagttaagctcacgag 13276126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 41536984 - 41536928
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    ||||||||||| |||||| || || |||||||| ||||||| |||||||||||||||    
T  41536984 ggggttcgaacttcgaaccttgcatatattatgtattgtccttatcaattgagttaa 41536928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 51436602 - 51436670
Alignment:
Q  148 gtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||  ||||| || || |||||||||||||| | |||||| ||||||||| |||||||    
T  51436602 gtcggggttcgaactccgaaccttgcatatattatgcattgttcgtatcaactgagttaagttcacgag 51436670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 56309324 - 56309364
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  56309324 atattatgcattgtccatatcaattgagttaagctcacgag 56309364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 874516 - 874453
Alignment:
Q  156 tcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||| ||||| ||| | |||||||||||||||| |||||| | ||||||| ||||||||||    
T  874516 tcgaaccacgaaccttatatatattatgcattgtccatatcaactaagttaagttcacgagaac 874453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 14202472 - 14202543
Alignment:
Q  145 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||| ||||| || || ||||| |||||||||||| |||  ||||| ||||||||| |||||||    
T  14202472 gtggtcggggtttgaaccccggaccttacatatattatgcattatccaaatcaactgagttaagctcacgag 14202543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 17134162 - 17134119
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||    
T  17134162 atattatgcattgtctctaccaattgagttaagctcacgagaac 17134119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 30135211 - 30135140
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    ||||||||||||||| |||||||| |  | ||| |||||||||||| ||| |||||| ||||||||| ||||    
T  30135211 gtggtggtcggggtttgaacctcggatctgacatatattatgcattatccttatcaactgagttaagctcac 30135140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 34960147 - 34960194
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 189  Q
    ||||||||||||||||||||||||||  ||| | ||||||||||||||    
T  34960147 gtggtggtcggggttcgaacctcgaatcttatatatattatgcattgt 34960194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 35021460 - 35021531
Alignment:
Q  145 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||| ||||| || || || ||||| ||||||| |||||| |||| |||| |||||||    
T  35021460 gtggtcggggttcgaaccccgaaccttgcatattttatgtattgtccatatcaactgagctaagctcacgag 35021531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 43034331 - 43034406
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||| ||||||| |||||||  || || || |||||||||||||||| || ||| ||||||||| |||||||    
T  43034331 ggtggtggccggggtttgaacctcagaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 43034406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 24664981 - 24665055
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||| || || || || |||||||||||| ||| || ||| |||| |||| |||||||    
T  24664981 gtggtggtcggggttcgaaccccggaccttgcatatattatgcattctccataccaactgagctaagctcacgag 24665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 29910498 - 29910460
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  29910498 atattatgcattgtccttatcaattgagttaagctcacg 29910460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 48171952 - 48171886
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||||||||||| |||||| |||| || || ||||||| ||||||| ||| ||| |||||||||    
T  48171952 gtggtggtcggggtttgaacctagaaccttgcatatattatacattgtctctaccaactgagttaag 48171886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 56096259 - 56096209
Alignment:
Q  158 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||| ||||| ||||| |||||||||||||||| |||||| |||||||||    
T  56096259 gaaccacgaaccttacatatattatgcattgtccttatcaactgagttaag 56096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 35823446 - 35823374
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||||||| ||| ||||||  ||| || || ||||||||| |||||| |||||||||||||||| ||||||    
T  35823446 gtggtggtcggtgtt-gaaccttaaaccttgcatatattatgccttgtccatatcaattgagttaagttcacga 35823374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 41521024 - 41520959
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||||| ||| |||||| |||| || || ||||||||||||||| ||| ||| |||||||||    
T  41521024 tggtggtcggagtttgaaccttgaaccttgcatatattatgcattgtctctaccaactgagttaag 41520959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 46434750 - 46434811
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    |||||| |||| ||| ||||||| ||| ||||| |||||||||||||||| |||||| ||||    
T  46434750 gtggtgatcggagtttgaacctcaaaccttacatatattatgcattgtccttatcaactgag 46434811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 49952587 - 49952632
Alignment:
Q  170 ttacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  49952587 ttacatatattatgcattgtccaaatcaattgagttaagctcacga 49952632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 54500640 - 54500563
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||| | ||| ||||| || || ||||| ||||||||||||||| ||| ||| |||| |||| ||||||||||    
T  54500640 gtggtggtcagtgtttgaaccccggaccttacatatattatgcattgtctctaccaactgagctaagctcacgagaac 54500563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 54677296 - 54677239
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaat 199  Q
    ||||||| ||| ||| ||| ||||||| ||||| |||||||||||||||| |||||||    
T  54677296 gtggtggccggagtttgaatctcgaaccttacatatattatgcattgtccatatcaat 54677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 7371546 - 7371610
Alignment:
Q  150 cggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||||||||||| || || || || |||||||| ||||||| |||||| ||||||||| |||||    
T  7371546 cggggttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctcacg 7371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 9946499 - 9946419
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacct 221  Q
    |||||||||||||||| ||||| || || || || || ||||||||||||| || ||| |||| |||| ||||||| ||||    
T  9946499 ggtggtggtcggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacgaggacct 9946419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 12712042 - 12712082
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  12712042 atattatgcattgtctctatcaaatgagttaagttcacgag 12712082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 14197449 - 14197497
Alignment:
Q  170 ttacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    ||||| ||||||||||||||||||| ||| ||||||||| | |||||||    
T  14197449 ttacatatattatgcattgtccctaccaactgagttaagcttacgagaa 14197497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 29568648 - 29568608
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtcc 191  Q
    ||||||||||||||| || ||||| ||||||||||||||||    
T  29568648 ggggttcgaacctcggaccttacatatattatgcattgtcc 29568608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 34595935 - 34595991
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    ||||||| |||| ||||| ||||| |||||||||||||||| || ||| ||||||||    
T  34595935 ggggttcaaaccccgaactttacatatattatgcattgtccttaccaactgagttaa 34595991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 33153870 - 33153941
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||| |||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  33153870 gtggtgttcggggtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcac 33153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 37705193 - 37705122
Alignment:
Q  145 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||| ||||||||||||| |||||| || |||||||||||||||| || || |||||||||| |||||||    
T  37705193 gtggtcagggttcgaacctcaaacattgcatatattatgcattgtccataccagttgagttaagttcacgag 37705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 10293007 - 10292935
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||||||||  |||| ||  | ||||| ||||||||||||||||||||||| ||||||||| |||||    
T  10293007 gtggtggtcggggtttaaaccccgtcccttacatatattatgcattgtccctatcaactgagttaagctcacg 10292935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 2613790 - 2613719
Alignment:
Q  145 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||| ||||| ||||| || ||||||||||||| || ||| |||| |||| |||||||    
T  2613790 gtggtcggggttcgaaccccgaaccttacatattttatgcattgtccataccaactgagctaagctcacgag 2613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 27533315 - 27533240
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| ||||| ||||| || || ||||||||||||||||||| ||| |||  |||| |||||||    
T  27533315 ggtggtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctaccaactgatctaagctcacgag 27533240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 3777790 - 3777712
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||| |||| ||||||||||| ||  | ||||||| |||| ||| |||||| ||||||||| ||||||||||    
T  3777790 ggtggtggtcgaggtttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagctcacgagaac 3777712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 13401666 - 13401612
Alignment:
Q  144 ggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaa 198  Q
    ||||||||||||| ||||| ||||| ||||| ||||||||||||||| |||||||    
T  13401666 ggtggtcggggtttgaaccccgaaccttacatatattatgcattgtctctatcaa 13401612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 14768878 - 14768800
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaa-cattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||||||| ||||| |||| | ||||| ||||||| ||||||||||| ||| ||||| ||| ||||||||||    
T  14768878 gtggtggtcggggtttgaaccccgaaactttacatatattatacattgtccctaccaactgagtcaagctcacgagaac 14768800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 41973326 - 41973260
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||| ||||||||||||| || || || || ||||||||||||||||||| ||||| |||||||    
T  41973326 gtggtggccggggttcgaaccccggaccttgcatatattatgcattgtccctaccaattaagttaag 41973260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 3431400 - 3431327
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||| |||||||| ||||| || |||||||||||| | |||| ||| ||||||||  |||||||    
T  3431400 tggtggtcggggtttgaacctcgtacattgcatatattatgcattcttcctaccaactgagttaaactcacgag 3431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 22388165 - 22388230
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    |||||||| || ||| ||| ||||||| ||||| ||||||||||||||||||||||| | ||||||    
T  22388165 gtggtggttggagtttgaatctcgaacgttacatatattatgcattgtccctatcaactaagttaa 22388230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 2884472 - 2884512
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  2884472 atattatgcattgtccatatcaactgagttaaggtcacgag 2884512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 18056712 - 18056772
Alignment:
Q  148 gtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||||||||||||  ||||| || |||||||||||||||| || ||| |||||||||    
T  18056712 gtcggggttcgaacctcacacattgcatatattatgcattgtccttaccaactgagttaag 18056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 12212364 - 12212293
Alignment:
Q  144 ggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||||||||| ||||| || || || || |||||||||||| |||||| ||| ||||||||| ||||||    
T  12212364 ggtggtcggggtttgaaccccggacgttgcatatattatgcattatccctaccaaatgagttaagctcacga 12212293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 17139506 - 17139581
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| ||||| || || ||  | ||||||||||||||||||| ||| |||| |||| |||||||    
T  17139506 ggtggtggtcggggtttgaaccccggaccttgaatatattatgcattgtccctaccaactgagctaagctcacgag 17139581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 30678826 - 30678877
Alignment:
Q  165 gaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||| |||||||    
T  30678826 gaaccttacatatattatgcattgtccctaccaactgagttaagctcacgag 30678877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 21041416 - 21041338
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||  |||||||||||||| |||||| || || ||||||||||||| || ||| |||| |||  ||||||||||    
T  21041416 ggtggtggctggggttcgaacctcaaacatttcatattttatgcattgtccataccaactgaggtaaactcacgagaac 21041338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 28341217 - 28341187
Alignment:
Q  177 tattatgcattgtccctatcaattgagttaa 207  Q
    |||||||||||||||||||||||||||||||    
T  28341217 tattatgcattgtccctatcaattgagttaa 28341187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 29042608 - 29042542
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||||||| || ||||| || |  ||||| |||||||||||| |||||| |||||||||||||    
T  29042608 gtggtggtcgggatttgaaccccggatcttacatatattatgcattatccctaccaattgagttaag 29042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 15382809 - 15382886
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||| |||| ||||||||||| || || || ||||||| |||||| | |||||| ||||||||| |||| |||||    
T  15382809 gtggtggccgggtttcgaacctcggaccttgcatatattatacattgttcatatcaactgagttaagctcacaagaac 15382886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 16967184 - 16967257
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||| ||| ||| ||||||||||| || || |||||||||||||||| |||||| | || |||| ||||||    
T  16967184 gtggtggccggagtttgaacctcgaaccttgcatatattatgcattgtccatatcaactaagctaagctcacga 16967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 17917128 - 17917189
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    ||||||||||||||| ||| | ||||| ||||| || ||||||||||||| |||||| ||||    
T  17917128 gtggtggtcggggtttgaatcccgaaccttacatattttatgcattgtccatatcaactgag 17917189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 18091237 - 18091200
Alignment:
Q  179 ttatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18091237 ttatgcattgtccctatcaactgagttaagctcacgag 18091200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 16033474 - 16033514
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  16033474 atattatgcattgtccctatcaactgagtcaagctcacgag 16033514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 18521284 - 18521244
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||| || ||||||||||||| |||||||    
T  18521284 atattatgcattgtccttaccaattgagttaagttcacgag 18521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 32433085 - 32433157
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||||||||||||||||||| ||||| ||| | || ||||||||| | | |||| | ||||||||| |||||    
T  32433085 gtggtggtcggggttcgaaccccgaaccttatatattttatgcatttttcatatcgactgagttaagctcacg 32433157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 36467014 - 36467086
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    ||||||||||||| || ||||||   || || || |||||||||||||||| |||||||||| ||||| ||||    
T  36467014 ggtggtggtcgggatttgaaccttataccttgcatatattatgcattgtccatatcaattgaattaagctcac 36467086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 41974832 - 41974776
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaa 198  Q
    ||||||| ||||||| ||||||| ||| || || |||||||||||| ||||||||||    
T  41974832 gtggtggccggggtttgaacctcaaaccttgcatatattatgcattatccctatcaa 41974776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 49130217 - 49130300
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacctaatt 225  Q
    |||||||||||||||||||| ||||||  || || || |||||||||  || || ||||||||||||| ||||||| || |||||    
T  49130217 ggtggtggtcggggttcgaa-ctcgaatcttgcatattttatgcattagccttaccaattgagttaagctcacgaggacataatt 49130300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 49222853 - 49222813
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||| |||||||| |||||||||||||||||| |||||||    
T  49222853 atattgtgcattgttcctatcaattgagttaagctcacgag 49222813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 21557503 - 21557430
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||| ||||||||||| || ||||| |||||||||||||||| ||  || ||||||||| |||||||    
T  21557503 tggtggtcgggattcgaacctcggaccttacatatattatgcattgtccatactaactgagttaagctcacgag 21557430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 23159511 - 23159441
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||||| ||| |||||||||||| ||||    
T  23159511 tggtggtcggggtttgaaccccgaatcttgcatatattatgcattgtccatatgaattgagttaagttcac 23159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 11709056 - 11708983
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||| |||| ||| || || || ||||||||||||||||||| ||| |||| |||| |||||||    
T  11709056 tggtggtcggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 11708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 6471583 - 6471503
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacct 221  Q
    |||||||| ||||||| ||||| |||||||| || |||||||||||||| ||||||   ||||||||  ||||||| ||||    
T  6471583 ggtggtggccggggtttgaaccccgaacattgcatatattatgcattgttcctatcggctgagttaaactcacgaggacct 6471503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 12938917 - 12938993
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    |||||||||||||||  ||  |||||| ||  | |||||||||||||||||||||| |||||||||| | |||||||    
T  12938917 gtggtggtcggggtttaaatttcgaaccttgtatatattatgcattgtccctatcagttgagttaagtttacgagaa 12938993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 13272537 - 13272585
Alignment:
Q  167 acattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    |||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  13272537 acattacatatattatgcattgtccatatcaactgagttaagttcacga 13272585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 18959210 - 18959154
Alignment:
Q  152 gggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||| ||||||||||| || || |||||||||||| |||||| |||||||||||||    
T  18959210 gggtttgaacctcgaaccttgcatatattatgcattatccctaacaattgagttaag 18959154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 34420852 - 34420924
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    |||||||||| |||| ||||||| ||| || || || ||||||||||||| || ||||||||||||| |||||    
T  34420852 gtggtggtcgaggtttgaacctcaaaccttgcatattttatgcattgtccataccaattgagttaagctcacg 34420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 3456833 - 3456884
Alignment:
Q  164 cgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||| ||||| |||||||||||||| | |||||||||||||||| ||||||    
T  3456833 cgaaccttacatatattatgcattgttcatatcaattgagttaagttcacga 3456884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 13357430 - 13357505
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||| || |||| |||||||| || || || |||||||||||||||| || ||| ||||||||| |||||||    
T  13357430 ggtggtggccgaggtttgaacctcgtaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 13357505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 9241086 - 9241012
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||| ||||||| |||| ||| || ||||| |||||||||||||| | || ||||||| ||||| |||||||    
T  9241086 gtggtggccggggtttgaacatcggaccttacatatattatgcattgtacttaccaattgatttaagctcacgag 9241012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 16843523 - 16843585
Alignment:
Q  152 gggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 214  Q
    ||||||||||| ||||| || || ||||||| |||||||| ||||||| |||||||| |||||    
T  16843523 gggttcgaaccacgaaccttgcatatattatacattgtccttatcaatcgagttaagctcacg 16843585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 30071505 - 30071579
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    |||||||||||||||| ||||||| ||| ||  | |||||||||||||| | |||||| | ||||||| ||||||    
T  30071505 ggtggtggtcggggttagaacctcaaaccttgtatatattatgcattgttcttatcaactaagttaagttcacga 30071579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 3650591 - 3650518
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||| ||||||| ||||| ||||| ||||| |||||||||||| |  ||| ||| ||||||||| ||||||    
T  3650591 gtggtggccggggtttgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacga 3650518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 10732774 - 10732839
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||| |||| ||  | |||||||||||||| | || ||||||||||||| |||||||    
T  10732774 ggggttcgaaccttgaaccttgtatatattatgcattgttcataccaattgagttaagctcacgag 10732839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 12133527 - 12133604
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||||||||| ||||||  | ||||| ||||| |||| ||||||||| | |||||||| ||||||| ||||| ||||    
T  12133527 gtggtggtcggagttcgattcccgaaccttacatatataatgcattgttcatatcaattcagttaagttcacgtgaac 12133604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 18422443 - 18422520
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||||| |||||| ||| | ||||| ||||| ||||||||||||||  ||||||| ||| ||||| | ||||||||    
T  18422443 gtggtggttggggtttgaatcccgaaccttacatatattatgcattgtttctatcaactgaattaagcttacgagaac 18422520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 26799254 - 26799189
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    ||||||||||||||  |||| ||||| || || || |||||||||||||||| ||| |||||||||    
T  26799254 tggtggtcggggttttaaccccgaaccttgcatattttatgcattgtccctaccaactgagttaag 26799189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 8837957 - 8837917
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||||||||  |||||||| |||||||    
T  8837957 atattatgcattgtccctatcaaccgagttaagttcacgag 8837917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 24429864 - 24429804
Alignment:
Q  148 gtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||| |||||||||| ||||| ||||| || ||||||||||||| |||||| |||| ||||    
T  24429864 gtcgtggttcgaaccccgaaccttacatattttatgcattgtccatatcaagtgagctaag 24429804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 44632175 - 44632223
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtc 190  Q
    ||||||||||||||| ||||| ||||| ||| | |||||||||||||||    
T  44632175 gtggtggtcggggtttgaaccccgaaccttatatatattatgcattgtc 44632223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 8629686 - 8629759
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    |||||||||| |||| ||||| ||||| || || |||||||||||||||| || ||||||||||||| ||||||    
T  8629686 gtggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctcacga 8629759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 24623307 - 24623368
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    ||||||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| ||||    
T  24623307 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgtccatatcaactgag 24623368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 5632206 - 5632131
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||||||||||||||||||  ||||  ||| | ||||||| |||||| |||| ||||||||||||| |||||||    
T  5632206 ggtggtggtcggggttcgaacgccgaatcttatatatattatacattgttcctaccaattgagttaagctcacgag 5632131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 32524411 - 32524486
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    ||||||| |||||| |||||  | || || || ||||||||||||||||||| ||||||||||||| |||||||||    
T  32524411 tggtggttggggtttgaaccctggactttgcatatattatgcattgtccctaccaattgagttaagctcacgagaa 32524486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 4826361 - 4826288
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||| ||| ||| ||||||||||| ||||| ||||||||||||||| ||| |||||||  |||| ||||||    
T  4826361 gtggtggccggagtttgaacctcgaaccttacatatattatgcattgtctctaccaattgaactaagttcacga 4826288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 10278525 - 10278448
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 218  Q
    ||||||||| ||||||||||| ||  |  || || |||||||||||||||| |||||||||||||||| | |||||||    
T  10278525 ggtggtggttggggttcgaacttcagatcttgcatatattatgcattgtccatatcaattgagttaagtttacgagaa 10278448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 12232172 - 12232233
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 203  Q
    ||||||||||||||||||||| |  ||| | || ||||||||||||||||||||||| ||||    
T  12232172 gtggtggtcggggttcgaaccccagacactgcatatattatgcattgtccctatcaactgag 12232233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 404225 - 404161
Alignment:
Q  151 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||||||||||| ||||| || |||||||||||||||| || ||| | ||||||| ||||||    
T  404225 ggggttcgaacctcggacattgcatatattatgcattgtccttaccaactaagttaagctcacga 404161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 28758815 - 28758867
Alignment:
Q  167 acattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||| || ||||||||| |||||||||| |||||||||||| ||||||||||    
T  28758815 acattgcatatattatgctttgtccctattaattgagttaagctcacgagaac 28758867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 2426719 - 2426758
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  2426719 atattatgcattgtctctatcaattgagttaaggttacga 2426758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 2445371 - 2445304
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||||||||||||||||| ||||  ||  | |||||||||||||| | |||||| |||||||||    
T  2445371 ggtggtggtcggggttcgaaccccgaatcttgtatatattatgcattgttcatatcaactgagttaag 2445304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 4553773 - 4553730
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||    
T  4553773 atattaagcattgtccgtatcaattgagttaagttcacgagaac 4553730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 15170002 - 15169955
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 189  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  15170002 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 15178774 - 15178727
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 189  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  15178774 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 19277634 - 19277571
Alignment:
Q  153 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||  |||| ||||  |||||||||||||| |||||||| ||||||||| |||||||    
T  19277634 ggttcgaaccctgaaccttacctatattatgcattgttcctatcaactgagttaagttcacgag 19277571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 788937 - 788863
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||| ||||  ||||| || || |||||||||||||||| || ||| |||| |||| |||||||    
T  788937 gtggtggtcggggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgag 788863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 29069551 - 29069481
Alignment:
Q  145 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 215  Q
    |||| ||||||| |||||||  || || || ||||||||||||||||||||||| |||| |||| ||||||    
T  29069551 gtggccggggtttgaacctcagacttttcatatattatgcattgtccctatcaactgagctaagctcacga 29069481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 8569780 - 8569715
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    ||||||| ||||||| ||||| || || || || |||||||||||||||| || ||||||||||||    
T  8569780 gtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaattgagttaa 8569715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 16390499 - 16390426
Alignment:
Q  143 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    |||||| || |||| ||||| || || ||||| ||||||||||||||||||| ||| |||| |||| |||||||    
T  16390499 tggtggccgaggtttgaaccccggaccttacatatattatgcattgtccctaccaactgaggtaagctcacgag 16390426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 24212554 - 24212595
Alignment:
Q  167 acattacagatattatgcattgtccctatcaattgagttaag 208  Q
    |||||||| |||||||||||||||| |||||| |||||||||    
T  24212554 acattacatatattatgcattgtccatatcaactgagttaag 24212595  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 16209 - 16151
Alignment:
Q  155 ttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||||||||| ||||| |||||||||||||||| ||| || ||||||||| ||||    
T  16209 ttcgaacctcgaactttacatatattatgcattgtccttattaaatgagttaagttcac 16151  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 161213 - 161141
Alignment:
Q  141 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 213  Q
    |||||||||||||||| ||||| ||||| || || || ||||||||||||| || ||| ||||||||| ||||    
T  161213 ggtggtggtcggggtttgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcac 161141  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 119639 - 119566
Alignment:
Q  143 tggtggtcg-gggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||| |||||| ||| ||| ||||| || ||||||| ||||||||||||||| ||||||||| |||||||    
T  119639 tggtggtcgagggttc-aacatcggacattgcaaatattatacattgtccctatcaactgagttaagctcacgag 119566  T

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Target: scaffold1160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 1702 - 1767
Alignment:
Q  142 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 207  Q
    |||||||  ||||||| |||||||||| || || || |||||||||||||||| ||| ||||||||    
T  1702 gtggtggctggggttcaaacctcgaaccttgcatattttatgcattgtccctaccaactgagttaa 1767  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 35946 - 35995
Alignment:
Q  170 ttacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 219  Q
    ||||| ||||| ||||||||||||||||| |||| |||| ||||||||||    
T  35946 ttacatatattgtgcattgtccctatcaactgagctaagctcacgagaac 35995  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 99074 - 99034
Alignment:
Q  176 atattatgcattgtccctatcaattgagttaaggtcacgag 216  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  99074 atattatgcattgtccctatcaactgagtcaagctcacgag 99034  T

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