View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8852_low_9 (Length: 320)

Name: NF8852_low_9
Description: NF8852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8852_low_9
NF8852_low_9
[»] chr6 (14 HSPs)
chr6 (16-316)||(21150115-21150401)
chr6 (181-256)||(21181559-21181634)
chr6 (40-123)||(21219957-21220041)
chr6 (162-227)||(21352233-21352299)
chr6 (199-262)||(31106485-31106548)
chr6 (183-257)||(21267154-21267228)
chr6 (184-262)||(31094768-31094846)
chr6 (165-233)||(21190469-21190538)
chr6 (183-255)||(21136783-21136855)
chr6 (134-251)||(21147277-21147401)
chr6 (188-255)||(21233462-21233530)
chr6 (173-225)||(21313062-21313114)
chr6 (134-191)||(21184371-21184429)
chr6 (166-251)||(21279840-21279926)
[»] scaffold0016 (2 HSPs)
scaffold0016 (181-311)||(65142-65275)
scaffold0016 (148-226)||(74842-74921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (177-237)||(20109-20168)
[»] scaffold0202 (1 HSPs)
scaffold0202 (184-262)||(3484-3562)
[»] chr8 (1 HSPs)
chr8 (196-249)||(24944361-24944414)
[»] scaffold0272 (1 HSPs)
scaffold0272 (222-262)||(3455-3495)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 21150115 - 21150401
Alignment:
Q  16 caaactctagagttctaactgagaatgtgtatatggtattctttaaaacttcgaaccattcaataaatccaactgataaaggaatccatgatacaaataa 115  Q
    ||||||||||| |  |||||||||||||||||||||| ||||||||||| | ||||||||||||  |||||| ||||||||          | |||||||    
T  21150115 caaactctagaatcataactgagaatgtgtatatggttttctttaaaacattgaaccattcaatggatccaattgataaagt---------tgcaaataa 21150205  T
Q  116 atccaattgataaaaaacgagaaattgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcaca 214  Q
    || |||||||||||  | ||||||||||||||||| |||||      ||||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  21150206 atacaattgataaatgaagagaaattgaggaaaaagttgag------aagtctaatgttaaggaagaagagaataatgaagatgctttattagatgcaca 21150299  T
Q  215 tgaaacattgtcacatttaacataatcattttaaatacattatatattaactattgatattgatttggattattaccctgtagtttatggtagtattatc 314  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21150300 tgaaacactctcacatttaacataatcaatttaaatacattatatattaactattgatattgatttggattattaccctgtagtttatggtagtattgtc 21150399  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 21181559 - 21181634
Alignment:
Q  181 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatta 256  Q
    |||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  21181559 aggagaataatgatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacatta 21181634  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 21219957 - 21220041
Alignment:
Q  40 atgtgtatatggtattctttaaaacttcgaaccattcaataaatccaactgataaaggaatc-catgatacaaataaatccaatt 123  Q
    |||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||  ||| | |||||||||||||||    
T  21219957 atgtgtatatggtattctttaaaattttgaaccattcaatcaatccaattgataaaggaatctaatgttgcaaataaatccaatt 21220041  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 21352233 - 21352299
Alignment:
Q  162 aaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtca 227  Q
    |||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  21352233 aaagtctaatgttaaggaagtggagaatgatgaacatgttttattagatgcacataaaacattgtca 21352299  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 31106548 - 31106485
Alignment:
Q  199 ctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 262  Q
    |||| |||||||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||    
T  31106548 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt 31106485  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 21267154 - 21267228
Alignment:
Q  183 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattat 257  Q
    |||||||||||| ||| ||| |||||||||||| |||||  ||||| || |||||||||||||||||| ||||||    
T  21267154 gagaatgatgaaaatgattttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattat 21267228  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 31094768 - 31094846
Alignment:
Q  184 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 262  Q
    |||||||||| ||| |||| ||||||||||||||| ||  ||| ||||||||| || ||||||||||||||||| ||||    
T  31094768 agaatgatgatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatt 31094846  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 21190469 - 21190538
Alignment:
Q  165 gtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacattta 233  Q
    ||||||||| |||||||| |||||  || |||||||||| ||||||| ||||||||||||||||||||||    
T  21190469 gtctaatgttaaggaagatgagaacaattaagatgcttttttagatgaacatgaaacattgtcacattta 21190538  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 21136783 - 21136855
Alignment:
Q  183 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 255  Q
    |||||||||||| ||||||| |||||||||||| ||||| ||||||  |||||||| | ||||||||| ||||    
T  21136783 gagaatgatgaaaatgcttttttagatgcacataaaacagtgtcactcttaacatattaattttaaatgcatt 21136855  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 21147277 - 21147401
Alignment:
Q  134 gagaaattgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatg-ctttattagatgcacatg-----aaacattgtc 226  Q
    |||||||||| |||||| ||||| ||  |||||||||||| ||||||||||||||||||||  |||  ||| || ||||||||||     ||||| ||||    
T  21147277 gagaaattgacgaaaaagttgagaatagaaagtctaatgttaaggaagaggagaatgatgactatgttttttttggatgcacatgacataaaacaatgtc 21147376  T
Q  227 acatttaacataatcattttaaata 251  Q
    ||||| |||| ||||||||||||||    
T  21147377 acattaaacagaatcattttaaata 21147401  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 21233462 - 21233530
Alignment:
Q  188 tgatgaagatgctttatta-gatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 255  Q
    ||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| ||||||| |||| |||||    
T  21233462 tgatgaagatgtttttttatgatgcgcatgaaacattttcacatttaacagaatcattataaacacatt 21233530  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 21313062 - 21313114
Alignment:
Q  173 taaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgt 225  Q
    |||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||    
T  21313062 taaggaagaggacaatgacgaagatgcttctttagatgcacacgaaacattgt 21313114  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 21184371 - 21184429
Alignment:
Q  134 gagaaattgaggaaaaaattgaggatccaaagtctaatg-taaggaagaggagaatgat 191  Q
    ||||||||||||||||| ||||| ||  ||||||| ||| |||||||||||||||||||    
T  21184371 gagaaattgaggaaaaagttgagaatagaaagtctgatgttaaggaagaggagaatgat 21184429  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 21279840 - 21279926
Alignment:
Q  166 tctaatgtaaggaa-gaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaata 251  Q
    |||||||||| ||| || |||||||||||||||||||| | ||||  |||||||||  |||||| | ||| | ||||||||||||||    
T  21279840 tctaatgtaaagaaagatgagaatgatgaagatgctttttaagatatacatgaaactgtgtcacgtataatagaatcattttaaata 21279926  T

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Target: scaffold0016 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 65275 - 65142
Alignment:
Q  181 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatattaactattgatattgattt 280  Q
    |||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||| || |||||||||| |||    
T  65275 aggagaatgatgaagatgcttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatttaccattgatattgcttt 65176  T
Q  281 ggatta---ttaccctgtagtttatggtagtatt 311  Q
    | ||||   |||| ||||||||||||||||||||    
T  65175 gaattatacttactctgtagtttatggtagtatt 65142  T

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Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 74921 - 74842
Alignment:
Q  148 aaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtc 226  Q
    ||||||||| ||  |||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  74921 aaaattgagaatagaaagtctaatgttaaggaagaggagaataatgaaggtgctttattagatgaacatgaaacattgtc 74842  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 20109 - 20168
Alignment:
Q  177 gaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacat 237  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||||||||| ||||||    
T  20109 gaagaggagaatgatgatgttgcttt-ttagatgcacatgaaagattgtcacatataacat 20168  T

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Target: scaffold0202 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 3484 - 3562
Alignment:
Q  184 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 262  Q
    ||||||| || ||| |||| ||||| ||||||||| || || ||||||||||| || ||||||||||||||||| ||||    
T  3484 agaatgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatt 3562  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 24944361 - 24944414
Alignment:
Q  196 atgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaa 249  Q
    ||||||| | |||||||||| ||| |||||||||||||||| ||||||| ||||    
T  24944361 atgctttttcagatgcacataaaatattgtcacatttaacaaaatcattataaa 24944414  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 3495 - 3455
Alignment:
Q  222 ttgtcacatttaacataatcattttaaatacattatatatt 262  Q
    ||||||||||||||| ||||||||| |||||||||| ||||    
T  3495 ttgtcacatttaacagaatcattttgaatacattatgtatt 3455  T

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