View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_high_1 (Length: 445)
Name: NF8853_high_1
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 46675906 - 46676245
Alignment:
| Q |
16 |
taacaaacatacccttatttaagcacttgacacaagcatagttctatgcagtagactccgacagaaaaacaattacaataactgaaaaagggtggaatct |
115 |
Q |
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| T |
46675906 |
taacgaacatacccttatttaagcacttgacacaagcatagttctatgtagtagactccgacagaaaaacaattacaataattgaaaaagggtggaatct |
46676005 |
T |
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| Q |
116 |
gaaagtcatgaagctcaaattcttgtcaat-taatatgtcnnnnnnnn-ttagcagaaagagaacacgttaagcataaaactaaaggatattgacaagag |
213 |
Q |
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| T |
46676006 |
gaaagtcattaagctcaaattcttgtcaatcttatatatcaaaaaaaaattagcagaaagagaacacgttaagcataaaactaaaggatattgacaagag |
46676105 |
T |
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| Q |
214 |
taccagaccctacgaacagagccaataaagcatggaacctacttgatggaagaaatttgataattaggagatgtaaaactaaggagtcatttttccaaaa |
313 |
Q |
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|||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46676106 |
taccagaccctatgaacagaaccaataaaacatggaacctacttgatggaagaaatttgataattaggagatgtaaaactaaggagtcatttttccaaaa |
46676205 |
T |
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| Q |
314 |
taaagatgagaagaataaagttatatgaagaattgataat |
353 |
Q |
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| T |
46676206 |
taaaaatgagaagaataaagttatatgaagaattgataat |
46676245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 21727579 - 21727636
Alignment:
| Q |
163 |
ttagcagaaagagaacacgttaagcataaaactaaaggatattgacaagagtaccagac |
221 |
Q |
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| T |
21727579 |
ttagcagaaagagaacacattaagcataaaact-aaggatattggaaagagtacaagac |
21727636 |
T |
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