View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8853_high_12 (Length: 263)

Name: NF8853_high_12
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8853_high_12
NF8853_high_12
[»] chr1 (9 HSPs)
chr1 (23-255)||(33042567-33042799)
chr1 (144-221)||(30710483-30710560)
chr1 (123-255)||(16252045-16252177)
chr1 (143-221)||(30689713-30689791)
chr1 (143-221)||(30718756-30718834)
chr1 (144-221)||(30656658-30656735)
chr1 (144-215)||(30698600-30698671)
chr1 (144-221)||(30671819-30671896)
chr1 (157-191)||(30623888-30623922)
[»] chr7 (1 HSPs)
chr7 (154-191)||(38862497-38862534)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 33042799 - 33042567
Alignment:
Q  23 aagaatgttttctcttaagagcaacaacaggggaacacccatcttcagaaccatcatcacaattcatatcactaagcgattctctaacaatctcaacagg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33042799 aagaatgttttctcttaagagcaacaacaggggaacacccatcttcagaaccatcatcacaattcatatcactaagcgattctctaacaatctcaacagg 33042700  T
Q  123 aaaattgagtattgcagaagaacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33042699 aaaattgagtattgcagaagaacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctc 33042600  T
Q  223 attccattcctcgtcgaatctcttatctctgct 255  Q
    |||||||||||||||||||||||||||||||||    
T  33042599 attccattcctcgtcgaatctcttatctctgct 33042567  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 30710483 - 30710560
Alignment:
Q  144 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 221  Q
    ||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| |||||    
T  30710483 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaaccct 30710560  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 16252045 - 16252177
Alignment:
Q  123 aaaattgagtattgcagaagaacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctc 222  Q
    |||||| ||| ||||||| ||||||||||| |||||||| |||||||||||||| |  || || ||||| ||||||||||| ||||||| ||| |||||     
T  16252045 aaaattaagtgttgcagatgaacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt 16252144  T
Q  223 attccattcctcgtcgaatctcttatctctgct 255  Q
    || ||||  || || ||||| ||||| ||||||    
T  16252145 atgccatgtctagttgaatcccttatttctgct 16252177  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 30689713 - 30689791
Alignment:
Q  143 aacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 221  Q
    |||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||| ||||| |||||    
T  30689713 aacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccct 30689791  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 30718756 - 30718834
Alignment:
Q  143 aacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 221  Q
    |||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||| ||||| |||||    
T  30718756 aacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccct 30718834  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 30656658 - 30656735
Alignment:
Q  144 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 221  Q
    ||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| |||||    
T  30656658 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaaccct 30656735  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 30698600 - 30698671
Alignment:
Q  144 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagcca 215  Q
    ||||||||| || || || |||||||||||||| ||||||||| |||| ||||||||||| |||||||||||    
T  30698600 acctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagcca 30698671  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 30671819 - 30671896
Alignment:
Q  144 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 221  Q
    ||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||| ||||| ||||| ||||| |||||    
T  30671819 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaaccct 30671896  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 30623888 - 30623922
Alignment:
Q  157 aaagctgcttgatcataagccaaagcagcagcttc 191  Q
    |||||||||||||||||||| ||||||||||||||    
T  30623888 aaagctgcttgatcataagctaaagcagcagcttc 30623922  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 38862534 - 38862497
Alignment:
Q  154 gaaaaagctgcttgatcataagccaaagcagcagcttc 191  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  38862534 gaaaaagctgcttgatcataagctaaagcagctgcttc 38862497  T

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