View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8853_high_13 (Length: 250)
Name: NF8853_high_13
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27807387 - 27807150
Alignment:
| Q |
1 |
tcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactatgattaactaatgtgaaagagagcttatctcatcttcacgccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27807387 |
tcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactatgactaactaatgtgaaagagagcttatctcatcttcacgccaa |
27807288 |
T |
|
| Q |
101 |
atattttccaaggatccatgtggcattcttcttggatttctcgcaaacggattcttgcacctatggcatgttgttatttgacaagtgataagcttgcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27807287 |
atattttccaaggatccatgtggcattcttcttggatttctcgcaaatggattcttgcacctatggcttgttgttatttgacaagtgataagcttgcatg |
27807188 |
T |
|
| Q |
201 |
agatattgacacgacttagcacatcatcaatcgagtat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27807187 |
agatattgacacgacttagcacatcatcaatcgagtat |
27807150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27815126 - 27814888
Alignment:
| Q |
1 |
tcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactatgattaactaatgtgaaagagagcttatctcatcttcacgccaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| |||||||| |||||| ||| || ||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
27815126 |
tcaaaatgagcaaatgtttataataagatcaatgcattctttaacccatttttctaggactaactaatgcgaaagagaccttatctcatcatcacgccaa |
27815027 |
T |
|
| Q |
101 |
atattttccaaggatccatgtggcattcttcttggatttctcgcaaacggattcttgcacctatggcatgttgttatttgacaagtgataagcttgcatg |
200 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
27815026 |
atatcttccaaggtcccatgtggcattcttcttggatttctcgcaaatggagtcttgcaccaaaggcatgttctaatttgacaagtgataagcttgcatg |
27814927 |
T |
|
| Q |
201 |
agatattgacacgacttagcacatcatcaatcgagtatt |
239 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
27814926 |
agttattgacacgactttgcacatcatcaaccgagtatt |
27814888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University