View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_high_15 (Length: 241)
Name: NF8853_high_15
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 32560902 - 32561123
Alignment:
| Q |
2 |
gattcattgcaaaaaattggagcaaagattgaacacaaatcagatatgtagtagcaagaatgagataatggaaagagtagggaacattgaaggtcttaac |
101 |
Q |
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| T |
32560902 |
gattcattgcaaaaaattggagcaaagattgaacacaaatcagatatgtagtagcaagaatgagataatggaaagagtagggaacattgaaggtcttaac |
32561001 |
T |
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| Q |
102 |
aagaatcaagttgttctttatcttgcagtagctgataaactacttcaaaattcttcaatattggaaggttggaaagaagggtttctaccttatgagaaga |
201 |
Q |
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| T |
32561002 |
aagaatcaagttgttctttatcttgcagtagctgataaactacttcaaaattcttcaatattggaaggttggaaggaagggtttctaccttttgagaaga |
32561101 |
T |
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| Q |
202 |
agaaacttggtgttgataaaat |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
32561102 |
agaaacttggtgttgataaaat |
32561123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10751451 - 10751529
Alignment:
| Q |
1 |
tgattcattgcaaaaaattggagcaaagattgaacacaaatcagatatgtagtagcaagaatgagataatggaaagagt |
79 |
Q |
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| T |
10751451 |
tgattcattgcaaaaagttagagcagagattgaacacaaatcagatatgcagtagcaagaaagagatagtggaaagagt |
10751529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 10751571 - 10751670
Alignment:
| Q |
118 |
tttatcttgcagtagctgataaactacttcaaaattcttcaatattggaaggttggaaagaagggtttctaccttatgagaagaagaaacttggtgttga |
217 |
Q |
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| T |
10751571 |
tttatcttgcagtagccgataaactccttaacaattcttccataatggaagactggggagaagggtttcttcctttcgagaaaaagaaactcggcgttga |
10751670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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