View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8853_high_5 (Length: 410)
Name: NF8853_high_5
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 21637098 - 21637397
Alignment:
| Q |
17 |
atcaatcaccaaccaaaaataactcgaggattaggagatgacatgattttagttatatataccaaccttgactttcttcaagagtttgatagatcctcct |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21637098 |
atcaatcaccaaccaaaaatgactcgaggattaggagatgacatgattttagttatatataccaaccttgactttcttcaagagtttgatagatcatcct |
21637197 |
T |
|
| Q |
117 |
caagtgcataggcggcgatcatcttttcaacttatataaccattaagaaattattgtaaattttagttactcagtgag-taagtaannnnnnnnnnnnnn |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21637198 |
caagtgcataggcggcgatcaacttttcaacttatataatcatacaaaaattattgtaaattttagttactcggtgagttaagtaa-------ttttttt |
21637290 |
T |
|
| Q |
216 |
natttgaatgggattaaagatctcatgc------atgttgtccacaaattttaaatcaaccgatatatttgtctctataagtagatttggctcaactctt |
309 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
21637291 |
tattagaatgggattaaagatctcatgcatgttgatgttgtccacaaaatttaaatcaaccgatata-ttgtctatataagtagatttggctcaactctt |
21637389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 21637447 - 21637523
Alignment:
| Q |
324 |
ttccatccaattatgaatgcaaggaagaagagtaaaataaactgacggaggttaataatttcaagaatcattctctg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||| |
|
|
| T |
21637447 |
ttccatccaattatgaatgcaaggaagaagagtgaaataaacatatggaggttaatgatttcaagaatcattctctg |
21637523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University