View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_high_6 (Length: 387)
Name: NF8853_high_6
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_high_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 38423330 - 38422944
Alignment:
| Q |
1 |
tccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaacacttgtttttcaactatattcctaattttctttt |
100 |
Q |
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| T |
38423330 |
tccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaacacttgtttttcaactatattcctaattttctttt |
38423231 |
T |
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| Q |
101 |
tctctatcccattnnnnnnnccttgagtactaagaaaagccaacgtggaaccttccttttctccttaatataaaccccaacccatctcttagttgcaaac |
200 |
Q |
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| T |
38423230 |
tctctatcccattaaaaaaaccttgagtactaagaaaagccaacgtggaaccttccttttctccttaatataaaccccaacccatctcttagttgcaaac |
38423131 |
T |
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| Q |
201 |
acaaagcaaagttgattatttgagtaattaatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaag |
300 |
Q |
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| T |
38423130 |
acaaagcaaagttgattatttgagtaattaatcaaaggaaaaaacgtaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaag |
38423031 |
T |
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| Q |
301 |
cattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacagacttactttgcctgtttcattcatggaagatgttgttt |
387 |
Q |
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| T |
38423030 |
cattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacacacttactttgcctgtttcattcatggaagatgttgttt |
38422944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 229 - 387
Target Start/End: Complemental strand, 38413218 - 38413057
Alignment:
| Q |
229 |
taatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatc |
328 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38413218 |
taatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatc |
38413119 |
T |
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| Q |
329 |
atcatc---attcaagtggaacagacttactttgcctgtttcattcatggaagatgttgttt |
387 |
Q |
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| T |
38413118 |
ttcatcaggattcaggtggaacagacttacttcgccggtttcattcatggaagatattgttt |
38413057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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